RNA id: XM_039804548.1


Basic Information

Item Value
RNA id XM_039804548.1
length 4886
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120561428
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35046844 ~ 35059631 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAATGCGCTGCGACCACAGACAGGATGAGACCGGATCCGGTGTGCAGAACATACATCACCCAATTAATTATAAGCGGACCAGAGCTTTTCTCCTAACAAGTCATCCTCCTGCGGTCACCCTGTGAGTGTTTGGAtcatctgtttgtttgttttttaacgtTTTGTTGGGACTAAAGCCAAAAGAAACCCCGAGGACCTGGAGAGGAATTATTTCAGAATTGGGGATTTTATTGaatttgactgtttttttaaaatctgcAACCTGCTGTGAAGCAGACATCTGCACTTAAATGAATGGAAAAGTCATAGAAGAAGCAACAAAGGAAACAGTTCCTCATTAAAGTTCCTCATTAACTAAAAGTTTTGTCAGATTTTCACGCCGTGTTTCAAACGTATCCATCTGTGGAACGAGGCACGTTTTGTGAAATTACAGAAGAAATGTGAAGACAAATTAGCCTCTTTGACGCACCGAGACAAATCCCTGCTCCTCGTTCTCACAGGCTGTTGATGGAGAGGATTTCGAATGTCAGCCGGGACAGTGGTCATCGCAGGAGGAATTCTGGCTACAGTCATCTTACTGACCATCGTCGCTGTACTGTGTTTATGTAGGTTGCAGTATTACTGCTGTAAGAGGGAGGAGTCTGAGAAGGGGGAAGAGGAGGAACCGGAGCTCGCCACCATGTCGCCTTCCTGGCCCCTGCCTCTGTCCGCTCCCCCTACACCTCCGACGCCGGAGCACTACGGCAACGAACCGGAGAACTACACCCCCACCTTCCTCACTGAGGCCAACGGGCCTGCCAGCTGCTTCCCAACACCGCCGCCGCGCAGGTGCCAGCGCTCACACACCTTCTGCCCGTCCTGCGCCCGCTGCTCGCTGCCCTTCTACCTGCAGCACCCGGAGAGGCTGTGCAACGGCGGGCGCAGAATCAGCTACAGGACTGTGCAGCAGCAGGACCTGGAGCTGCCCATAGATCTGGCCAGCTTCTACCAGAAGCTCAACCTCATCCGCTCCGTCACCATGAGGGAGGTGGTCAACCACAGCGTCAGCACCGACGTCTAGGAGCAGGCAGGGGGAAGGCCGCGCCGTCCTGCTAGCCTGGAGGAAAATTGCACTGACTTGGTGCTGTCCGCAGAATACACAAAATTACTTTGTGTTGTGCTGTGGGTTCAGCATTATTGGTGTGCTGCACTAATGTACTACAACACTGAGGGCTTTTGGGTGATGTAACACATCTCCTGGCAGTCATATTGGAGGTCTACAGCTCTGGAGCGACTGCTACTGTAACAGCTGAATGCATATGTGATGTAGTTTAACATTTGTTTCTGACAGACTTGAACGGACTCATTTGTGTCAagtttgacttaaaactgatcATTTTGTGACCAATATGTCTGATTTTGATGTTTAGAAAATTAGCTTGTTTGTTAATTAGCTAGTtaagtagctaaacaataagtCTATCAAAGTATAAAGAAGAAAATTCACAATTTGAGCTTTTGTCGGTAAATTAAACACCGACAAATGCACCACACAAGAGACAGAATGCAAACATGAGGTTTTCTAAATGAGGCTAATGGCTAGTTAGCTACCTAGCTTACTCTGAAATCTCTGCTAAAGAATAAGTCGTGGATGCAtaaagagaactggatacagcgtGTGAGGCAGGCCCCCTTAATTCATACAGTATGAAAGTTTTTCAGTGGTGCATGGCGCATGAAGCACTAGAGACTTCCGCTGACTAAACCGGCTACTCCTGGTTTAGCTGTTCGCTAATTTGAATGGGGAATATTGATTTAATCGTgcggctcttctagactttccaaatgttgtTGGATcaaatggataaaaaaaaagtaatttcccAGTGGTTGTGATGCTCAAAAACCCTATCCACTTATTAACAGACATCTCTTTCGCCATGTAAGTCTGTGGGAAAAAGTCCTTTTGGAGCAGAGGGCATCCCGTGACTTtgtaattccactgtttggccACTATGTCGAATATGCCTCAAAGCCCGGCGCACTTCTGGGGGACCATGAGTCTGGTCTTAATGCGTTTGTGTTGACTGTGTGAatgcaaacagaaaaaaagcctGTAAAGGTATGTAGTTCTTCGGGGGAGCTCTGCTATACAGTTTCTCTCAGGGAGTCCCCAGAACTCTTTGGTCCAAAAACACAGATTGTCAACCCATGTGCAGACCAAAACCCAACAGTGAATGTAtctactaacaagtattgtTTGTGTATTAAAGCATGATgtatcttcttcctctgtgtcaTAGAGCTCCATTAATGTAACAAAAACCCATCAATGAGCCGCACTGTTGCGCAGGGTGTCATGTTCCTTCCttgccatgaacacacacactgtagtttattttcaaTTAGAGCATACTGACACACCCAGTTAAATTGTGCCCGAACACGTTTTTGCCCCAAAGTCCGGTTCGTTTGACTAGTGTGGTCGCTAAATGGTGCCCGGGCCCGCTTAACCGTGCCCAGGCCCGCTTGAAAGAGGTGGGCCAGGGGGCCTGGGCACCGTTGAAGGTAACTGGGCCAAGTGTTTAGTAAGCCCTTAATTCCACACACACCGTCCCATACAAAAACTACAGTGATAGCTGATTTTGGAAATTACTAAGACTTAAGAAAAAAGTGAAactacatttgtgtttttaaagatgTTATGTCTTCAGTAGGAACTAATGGCTTTGGAGCTGGGAGAAGCAGACAGGAAATCATCAAAGTATTTagacacattgttggttttggtcttttcatgggcaATGTTAGCacgaaaaatataaaataacactTATCTTGAAAGCTCCAAATCAAGAGGGTTTCGGAGAAGAAATACTGACGAGCTGCAATCTGTTTCCTGAGTCCGTAGCTTCCGTTTGGAGACCAATTTATTGTATTTGAAGACTGTTCACATTGACTCAGACTGTCACTGACTACAGTCAGTCTCCAACAGACTAGTACTCTGCTCCTGTACTGAACATACAGTGTATATGTGTACTTTTACAGTTTACCTTTAACACCACTTGACTTTGATTTCATTCATGCAGTGGGAAATATATAAGTGGATGTTGACACggacaaaatgttttatttgtgtgtgtttgtgtagcaaCAACTGTACAGTGTTACATTTCACCTTTATTTCTTTCACAgtgacattttacagtttattaTCTGTTCAGGCTGGAGGTGCACAGATGTTTTCACTCATTCTGCCTGATTATAGACTGAGTCAGGGTCTCAACACCTGTGTGAGCTGCTTAGATGCAGAGAATATAGTGAGCCATTTCAACTATTTTTCAATTGTCAGTTTGAGTGCACTAAGCATTTTGTGCTTGCGCATTCCCTTTTCACCCTCTGTACTATATTGACTCATTAAATCAGAATTTTAATTGAAATTTTCACATCAAAAATCTATACTTCAGTATCAAGAATTCTGCTTATAATGTTATGTCGTTTTTGAGAATCCTTACTATTAGAAATTAGATTTTTACTCAGgcaaaatgttattatttctGTCATGAATTCCATTTTTCATTAGTTGACTTTCAAATATATATTCTCGATCTTGAAATTACTCAATAAATCACCTACATTTTTTGTATGAACTGCTTGACAAGTTAAAAGATATCTATAAAAATTCAAATTTAGAAATTATAAATTcagctcttgagcaaggcaagACATTCTTTTAACATCAAGGATTGATTTGATATTATTTTCTAGATAGAAATGTAtccttggttaaaaaaaaaaaaaaaaaaagctaaaacattGCAGACGTCAGGAGCTTCAGTTTGACCCATTTTTGTGCTCACTTGTGTAGATTTGTCAGCAAAGcgatgtgttgttgtttttttgtcccaACTCACAGAGCAGCTGGTGATCCTGTCAGTATGTGagtgtttcagtgtgtgaatTCCTGTTTGTCTGCGGAGTGTCTCGGTGCAGAAaacaaatcacattttaaaagggcTTTTCTGAAGCATTCAAAGTTCCAATGGCTGTGATTTCTGGAAGATATTTATTTCCTGTTAAAGACATCAAGTAGATGCTGTGCTGTAGGCCAGGATTCTGCACCATGAGGTATCCAGCATTTAAGAAAAAACCTGCACATTTCTTAATGATAGTACAGTAGTAGTACTCTGTTTATTCTCTCTCAGAAAATGAGTGTTTTTTCCTGTCATGTGTGATTTAGTCCTTCCGTGTTTTTCATGAGGTGTGTGTTAACACATTGTGATCGTCTAACACTGATAGAGAGTGGAGGACCTGCAGAGCCCTAAAACACCTCGGCTAGGATGAATGGATGTGTGTTGGCGGTTAGGATAGTTGCAGCAGTTAGCGTGCCTAAAGCAGAGGTTATCAATTGTTTTCCGGCAATTTTTTTTAGCCAAGACTAAATGAAACACAGAAGAGAAGAGGGTTTTTGGGATTAAAGTTTGCATGCAGCCACAGAGGAAGGACATCCTGGTAGTCAACTCTCTCTGCCAAAGAAATATCCAGCCTGTCGATCAATAAAGCCTCAGACATGAATCCATTCAGGGTGTTTTGGGGGGACGAAGCTGCACGTACTACACTTTGTATTTGTAAGTTCCTGGGGAAGAATGAGTGCAGAACCACTTTCATTATTCAGTGAGTGTTTCcagacttatttttttttttcctttggatAAGACTGAAACGGTTGCATTTGTTTCCTGTCTGCTTCATCAGTTGATGTGTTTCTGTTAAATCCTGCAGTTCAGTAGATGATGAGGCTTGATGCTGACCAGCAGGGGGCGCCAGCTGCTGTCAAACGTGCATCAACTGCAGCTGCTCTGTAAGTGATTTAATTTACAGTGTTAAATAAAAGGATGCAAAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89494 lncRNA upstream 44648 35000278 ~ 35002196 (+) True G66907
TU89403 lncRNA upstream 182154 34861499 ~ 34864690 (+) True G66832
TU89406 lncRNA upstream 217190 34828892 ~ 34829654 (+) True G66834
TU89399 lncRNA upstream 230517 34815589 ~ 34816327 (+) True G66830
TU89323 lncRNA upstream 537231 34508142 ~ 34509613 (+) True G66769
XR_005639572.1 lncRNA downstream 196030 35255661 ~ 35258072 (+) True LOC120561203
TU89602 lncRNA downstream 329145 35388776 ~ 35406557 (+) False G66997
TU89604 lncRNA downstream 346264 35405895 ~ 35417807 (+) True G66997
TU89791 lncRNA downstream 811792 35871423 ~ 35993376 (+) False G67152
TU89792 lncRNA downstream 811792 35871423 ~ 35877725 (+) False G67152
XM_039804036.1 mRNA upstream 94367 34951502 ~ 34952477 (+) True LOC120561072
XM_039804035.1 mRNA upstream 151215 34885538 ~ 34895629 (+) True LOC120561071
XM_039802045.1 mRNA upstream 232349 34809084 ~ 34814495 (+) True tor2a
XM_039802732.1 mRNA upstream 240897 34774749 ~ 34805947 (+) False sh2d3cb
XM_039803990.1 mRNA downstream 65928 35125559 ~ 35131747 (+) False mymk
XM_039803989.1 mRNA downstream 68099 35127730 ~ 35131747 (+) False mymk
XM_039803988.1 mRNA downstream 68102 35127733 ~ 35131747 (+) True mymk
XM_039804099.1 mRNA downstream 86119 35145750 ~ 35160654 (+) True slc2a8
XM_039804101.1 mRNA downstream 87908 35147539 ~ 35160654 (+) False slc2a8
TU89401 other upstream 182578 34861499 ~ 34864266 (+) False G66832
TU89402 other upstream 182578 34861499 ~ 34864266 (+) False G66832
TU89404 other upstream 182578 34861499 ~ 34864266 (+) False G66832
TU89395 other upstream 273144 34765946 ~ 34773700 (+) False LOC120561070
XR_005639528.1 other upstream 519439 34514010 ~ 34527405 (+) False cfap157
XR_005639497.1 other downstream 463034 35522665 ~ 35547463 (+) False LOC120560625
TU89783 other downstream 781243 35840874 ~ 35852056 (+) True G67146
TU89780 other downstream 781903 35841534 ~ 35854161 (+) False G67145
TU89779 other downstream 782447 35842078 ~ 35854161 (+) True G67145
TU89790 other downstream 811792 35871423 ~ 36023264 (+) False G67152

Expression Profile