RNA id: TU89780


Basic Information

Item Value
RNA id TU89780
length 1790
RNA type TUCP
GC content 0.43
exon number 3
gene id G67145
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35841534 ~ 35854161 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cACTCTACCTTTACCACCTTGCTGGATTCCTCTGGCTGCTCTTTGGTGTTTGGCTGTTGGTTCTCTGCCTGGAGCTGATTCTCCTCTCGGAgctctttgttttcttcctgaTTTCTCTCAGATGTTTCTTCCTTATTTCTCGGCTGTTGGTTCTCTGCCTGGAGCTGATTCTCCTCTCGGAGCTCTTGGTTTTGTCTCCCGACTGTTTCTTGATGTGTTTTCAGATCTGGCTTCTCTGTAACTTCTTTGAGTTTTTGTTCTCTCAGACACTCATTTAACTGTCCATGTATGACCTCCTTGGAGGTCTGTTGCGTTTCATCAATGTCAgtctccatccctcctttccctctttctttccactCTACCTTTACCACCTTGCTGGAGTCCTGTTCCTTGTTTTCTTCCTGATTTTTCTCAGATGTTTCTTCCTTATTTCTCGGCTGATGGTTCTCTGCCTGGAGCGGATTCTCCTCTCGGAGCTCTTGCTTTTCTCTCCCTGCTGTTTCTTGATGTGTTTTGAGATCTGGCTTCTCTGTAACTTCACTAGTACTGACTGATGGAATCGTATTCTCACTCTgatctctctttatctctctgtcCTTTGATTTCTCATTCGTTTGCACCTTTTGGCTTTCTGTTTTCCTTTCTGTCATTGTAGTAATATTactctgctctccctcctgatcTTTACCTTTCTTATCTTTATGTTCTTCCTCTTGTTTGCTGGTTTCTAAAACTTGCTGGTTGACATCTCCTTTCTGTGTTTTGGTCTCTATCTTCTCTTTATTCCTCTTTAAATTGTCCTGCTCCTCTGACTGCagcttcctctctttctccatcttctcttcctctgtcttctcCAAACTCTCATTCATTTGCTCCTTTTGGTTTTCTGCCTTTCTTTGTGTCTGGTTTCCCTCCTGATCTTTTCCTTTCTTATCCTCATGTCCTGCCTTACTCGTGTCCTGCTTTCTGTCTTGTAAAACATGTTGGTTGTCCTtttctgtctgtggtttgatTCTTTTGGCTTTCCtgttcttccttttcttttttcttatatATTTGGCTCTTTCTTGCGCACATCAGTCATTGGCTCTTGCCgtgtctcttcttctttctcttcctcctgaTCAGCCTTGACATTTTGCAGCTGCTCTTTTGGTCCTTCTGCCAGCAGCACCAGTGAACGTCCTGAATCTTCTTCTACTGGTTTCATCGTCTGCTCTCCTTCACCCTGGTCCCCATCATGTTTTACTTCTCTTcctgtcatgtcttgtttttggtgtttttctaCTTCTGTTGGAATCAGAGGTACGTTTTCATTCTTTATAGATGTAAcgtccctctctccttctgctCTGTCCATATCTGGTTTGGTCTCCAGCTGGTTTTGTTGTGTTTCATTTTTCTGTTCACTTTGAGATCCGTCCTCGTCCTCTGCTCTCATCCCAttattctcttcctctcttcctgccaTCAGCGGAGCACTTTCTCCTTCTCGCTCCATCAGGACCTGGACTCCTGTGTTATCACGTTTAGATGTGACCTTCTTCTCTTCCTCGGTGTGTTCAGCTCCGTCCTCCAGGCTCCTCCTCTTGTTTTCTGTGTGAATAGAGAAGCAGGAGAAACTTTTTGTTGATGTCTGTATTGAGTTTTTCTGTTAGTATTTCCTTATATAAGATTGCGATATACTTTATCGATCCTACAAGGggaaatcattttttttcagcctgttgttagtatagtgttttttgttttcatttatttatagtatttaCTTTTATATAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89604 lncRNA upstream 423727 35405895 ~ 35417807 (+) True G66997
TU89602 lncRNA upstream 434977 35388776 ~ 35406557 (+) False G66997
XR_005639572.1 lncRNA upstream 583462 35255661 ~ 35258072 (+) True LOC120561203
TU89494 lncRNA upstream 839338 35000278 ~ 35002196 (+) True G66907
TU89403 lncRNA upstream 976844 34861499 ~ 34864690 (+) True G66832
TU89791 lncRNA downstream 17262 35871423 ~ 35993376 (+) False G67152
TU89792 lncRNA downstream 17262 35871423 ~ 35877725 (+) False G67152
XR_005639503.1 lncRNA downstream 40990 35895151 ~ 35896357 (+) False LOC120560688
TU89802 lncRNA downstream 41018 35895179 ~ 35898183 (+) True LOC120560688
TU89804 lncRNA downstream 41018 35895179 ~ 35897011 (+) False LOC120560688
XM_039803348.1 mRNA upstream 45300 35789091 ~ 35796234 (+) False rnf214
XM_039803347.1 mRNA upstream 45300 35789684 ~ 35796234 (+) True rnf214
XM_039804555.1 mRNA upstream 157990 35675371 ~ 35683544 (+) True LOC120561433
XM_039803305.1 mRNA upstream 221668 35613852 ~ 35619866 (+) False LOC120560626
XM_039804045.1 mRNA downstream 173149 36027310 ~ 36035340 (+) True LOC120561090
XM_039803579.1 mRNA downstream 324068 36178229 ~ 36217618 (+) True cemip2
XM_039803041.1 mRNA downstream 387418 36241579 ~ 36434202 (+) True trpm3
XM_039803036.1 mRNA downstream 387420 36241581 ~ 36429696 (+) False trpm3
XM_039803042.1 mRNA downstream 429911 36284072 ~ 36434202 (+) False trpm3
XR_005639497.1 other upstream 294071 35522665 ~ 35547463 (+) False LOC120560625
TU89504 other upstream 781916 35046855 ~ 35059618 (+) False LOC120561428
TU89401 other upstream 977268 34861499 ~ 34864266 (+) False G66832
TU89790 other downstream 17262 35871423 ~ 36023264 (+) False G67152
TU89793 other downstream 17262 35871423 ~ 36019253 (+) True G67152
unassigned_transcript_268 other downstream 307237 36161398 ~ 36161471 (+) True trnai-aau_2
unassigned_transcript_269 other downstream 322318 36176479 ~ 36176551 (+) True trnaf-gaa_4
TU89972 other downstream 624091 36478252 ~ 36481293 (+) False LOC120560081

Expression Profile