RNA id: TU90333


Basic Information

Item Value
RNA id TU90333
length 2011
RNA type TUCP
GC content 0.39
exon number 8
gene id G67577
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37535859 ~ 37554767 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttgtgttTGGAGGTTATTCAGAATTTTCGAGAAACtctattcaaactttaaaatgttaggGTAGTATTCAACTTTCAAATCACATTATCAGTTTTTGAAATATTCAACCCTCTttgaggcttttaaaaaaattccCTTCTGATTTGTTTACATTATGTGCCAATTGCTGTTATTGCAGCACGTCAGCACACTGAATTAAttcagtattaagcaagatcactgcggtgaaacaagctacaatGTCCCTGCAGCAGACACTGTTTAAAAGACAGAGCCCTTCATTAAACATACAGGATACTTTAACCTCTTACCTAAACACAATTCAGTTTGGATGGAAATCTGACTGCCACTATGAAATACTTGGCTCTGGCTGTGCTGCTATGTGCTCTGGTGTCACTGTCAAACGCTTATTGCTTCCCAAAGGCCATGAAACcagGCATGACCCATTGTCAGGACGATGTGGATACTTTAACCTCTTACCTAAACACAATTCAGTTCGGACGGAAATTTGACTGCCACTATGAAATACTTGGCTCTGGCTGTGCTGCTATGTGCTCTGGTGTCACTGTCAAACGCGTATTGCTTCCAAAAGGCCATGAAACCAGGCGTGACCCATTGTCAGGACGATGTGGATCAGACGTGGCATGCTATGGGATCTTCATGGAGAAACAGTGGATGTATGGATTGTGACTGCGGTGGCTGCTGTTCTGCGTATTCAACCCCCAAACATTTCCCTGATGACTGCGTGTCAGTTTTTGACTCTCATGCTTGTGAATACATAGTGCACAAGAAGGACGACCCATCGGTATTATGTCCAATTTATGGATCAGTAGGGAAGTGATGGCTGTTGGGAAGGTCTGCAGTATTTTCTTggctgagagagaaagatggaggtGGGATCCCTCACTGGCTTCTCACCGGGAAACACTGCCTGTTGGGTTGGTTGTAACACACgaccaaacaggaagcacagCTGctgaaaattgaaaataaaatctaaaaaaaaatgtaaatttcttCATGATTCACTCCTTTTTTGCctaattttgtttgtttgagaaAGAAGAGAATCTCAAGTACACAAACTACTCCCCCAATTCTGCACTTGAAGTTCAGCACACTCTTCATGATGGATTTTATTTTGggtatgaaaaaaacacaatagaCTTAAAAACATGTATGCTTAGTCAACCCCAGGGGTTACATGGAAGGGTAACTCAACACTTATTTCACTTATTTACCTCGGTGTTAAGACAATACGTCAGCAGACGGACACGCGTAAAACACATCACATTGATAACATCAATCTAAACAGTGCTTTATCTTGCATAATAATTCAAATGATACAAACATGTCAAGAttccaccctttgcttttttattaataagggaacaaattccactaattaaccctgacaaagcacaccggtgtaggtaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagttaccaaaaaaagcaaagggtggctactttgaagaatctaaaatataagacatgttttcacaaTATAAGACACtatttaaaaaagacaaagtCCTTCATTAAACATACAGGATACTTTAACCTCTTACCTAAACACAATCAATTCGGACAGAAATCTGACTGCCACTATGGTGAGTTTTAAGATGGTTGAGTTATGAATTGTTTGTTGGGAGCTGAATTTGTGTTTTGACTGGATAAAGTAATGCCAATCATGGGGAGTTGTTATACAAACTGATGTTTACTAGtgaataaaagtaataaaaattgATTTGGACTCATTTTACGGATATCATGTCATGGTTGTCAAATACTTTACAGAATGATTCATCTCTGTTTTATAGCAGCTcaatcgatttttttttcagccaagGACCTTTTAAAAGATAGAGAATATACCAGGGGCCGACTCATATGTCCCTTACAATAATTTGAAGTAgttcatttatacatttatacagTCTTTGTTATGTGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90293 lncRNA downstream 93649 37439315 ~ 37444538 (-) True G67550
TU90292 lncRNA downstream 93649 37440974 ~ 37444538 (-) False G67550
TU90262 lncRNA downstream 207067 37330638 ~ 37331120 (-) True G67521
TU90237 lncRNA downstream 211828 37229742 ~ 37326359 (-) False adrb3a
TU90222 lncRNA downstream 430728 37102992 ~ 37107459 (-) True G67486
TU90466 lncRNA upstream 385114 37939881 ~ 37940295 (-) True G67681
TU90472 lncRNA upstream 434465 37989232 ~ 37989542 (-) True G67687
TU90684 lncRNA upstream 560479 38115246 ~ 38116233 (-) True G67861
TU90708 lncRNA upstream 591229 38145996 ~ 38146799 (-) True G67882
TU90709 lncRNA upstream 620958 38175725 ~ 38175961 (-) True G67883
XM_039804251.1 mRNA downstream 2210 37478088 ~ 37535977 (-) True LOC120561221
XM_039802299.1 mRNA downstream 100313 37432114 ~ 37437874 (-) True c6h9orf78
XM_039804308.1 mRNA downstream 211786 37309033 ~ 37326401 (-) True adrb3a
XM_039802264.1 mRNA downstream 235207 37282580 ~ 37302980 (-) False got1l1
XM_039802378.1 mRNA upstream 100256 37655023 ~ 37684179 (-) False disp3
XM_039802380.1 mRNA upstream 100256 37655023 ~ 37683838 (-) False disp3
XM_039802376.1 mRNA upstream 100256 37655023 ~ 37683838 (-) False disp3
XM_039802379.1 mRNA upstream 100256 37655023 ~ 37677831 (-) True disp3
XM_039802382.1 mRNA upstream 131165 37685932 ~ 37700288 (-) False si:dkey-32e23.4
TU90264 other downstream 193104 37344461 ~ 37345083 (-) True G67523
TU90215 other downstream 386541 37147741 ~ 37151646 (-) True G67483
TU89851 other downstream 1684551 35843403 ~ 35853636 (-) False LOC120561089
unassigned_transcript_270 other upstream 871934 38426701 ~ 38426773 (-) True trnaf-gaa_5
unassigned_transcript_272 other upstream 880651 38435418 ~ 38435490 (-) True trnaf-gaa_7
TU90908 other upstream 1859115 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other upstream 1859115 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other upstream 1859115 39413882 ~ 39425293 (-) False LOC120560826

Expression Profile