RNA id: TU90336


Basic Information

Item Value
RNA id TU90336
length 1702
lncRNA type read_through
GC content 0.43
exon number 7
gene id G67577
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37535859 ~ 37554767 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAAATCTCCCCTCCAGCATGGTAGCCGATGGTACGGCCCAATTGGCAGGCCATAGTATATAACAGTCCTTCATGATTGGCCACTTCTTTTCTGCACCGGGAAAGACCTCACCACCAGCATGAAATACTTGGCTCTGGCTGTGCTGCTATGTGCTCTGGTGTCACTGTCAAACGCGTATTGCTTCCAAAAGGCCATGAAACCAGGCGTGACCCATTGTCAGGACGATGTGGATCAGACGTGGCATGCTATGGGATCTTCATGGAGAAACAGTGGATGTATGGATTGTGACTGCGGTGGCTGCTGTTCTGCGTATTCAACCCCCAAACATTTCCCTGATGACTGCGTGTCAGTTTTTGACTCTCATGCTTGTGAATACATAGTGCACAAGAAGGACGACCCATCGGTATTATGTCCAATTTATGGATCAGTAGGGAAGTGATGGCTGTTGGGAAGGTCTGCAGTATTTTCTTggctgagagagaaagatggaggtGGGATCCCTCACTGGCTTCTCACCGGGAAACACTGCCTGTTGGGTTGGTTGTAACACACgaccaaacaggaagcacagCTGctgaaaattgaaaataaaatctaaaaaaaaatgtaaatttcttCATGATTCACTCCTTTTTTGCctaattttgtttgtttgagaaAGAAGAGAATCTCAAGTACACAAACTACTCCCCCAATTCTGCACTTGAAGTTCAGCACACTCTTCATGATGGATTTTATTTTGggtatgaaaaaaacacaatagaCTTAAAAACATGTATGCTTAGTCAACCCCAGGGGTTACATGGAAGGGTAACTCAACACTTATTTCACTTATTTACCTCGGTGTTAAGACAATACGTCAGCAGACGGACACGCGTAAAACACATCACATTGATAACATCAATCTAAACAGTGCTTTATCTTGCATAATAATTCAAATGATACAAACATGTCAAGAttccaccctttgcttttttattaataagggaacaaattccactaattaaccctgacaaagcacaccggtgtaggtaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagttaccaaaaaaagcaaagggtggctactttgaagaatctaaaatataagacatgttttcacaaTATAAGACACtatttaaaaaagacaaagtCCTTCATTAAACATACAGGATACTTTAACCTCTTACCTAAACACAATCAATTCGGACAGAAATCTGACTGCCACTATGAAATACTTGGCTCTGGCTATGCTGCTATGTGCTCTGGCGTCACTGTCAAGCGCTCAATGCTACTATACGCTCCTGAAACcagGCGTGACCCATTGTCAGGACGATGTGGATCAGACGTGGCATGCTGTGGGATCTAGATGGAGAAACAGTAGATGTATGGACTGTGACTGCGGTCGCTGTTGTGCTGGGTATTCAACCCCCAAACTTTTCCCTGATGACTGCGTGTCAGTTTTTGACTCGCAAGCTTGTAAATACATAGTGCACAAGAAGAATGACCCATCCGTATTATGTCCAATTTATGGAGCAGCAGGGAAGTGATGGCTGTTGGGAAGGTCTGCAGTATTTTCTTGGacaagagagaaagatagaggtGGGATCCCTCACCGGGAAACACTGCCTGTTGGGTTGGTTGTAACACacaaccaaacaggaagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90293 lncRNA downstream 91321 37439315 ~ 37444538 (-) True G67550
TU90292 lncRNA downstream 91321 37440974 ~ 37444538 (-) False G67550
TU90262 lncRNA downstream 204739 37330638 ~ 37331120 (-) True G67521
TU90237 lncRNA downstream 209500 37229742 ~ 37326359 (-) False adrb3a
TU90222 lncRNA downstream 428400 37102992 ~ 37107459 (-) True G67486
TU90466 lncRNA upstream 398222 37939881 ~ 37940295 (-) True G67681
TU90472 lncRNA upstream 447573 37989232 ~ 37989542 (-) True G67687
TU90684 lncRNA upstream 573587 38115246 ~ 38116233 (-) True G67861
TU90708 lncRNA upstream 604337 38145996 ~ 38146799 (-) True G67882
TU90709 lncRNA upstream 634066 38175725 ~ 38175961 (-) True G67883
XM_039802299.1 mRNA downstream 97985 37432114 ~ 37437874 (-) True c6h9orf78
XM_039804308.1 mRNA downstream 209458 37309033 ~ 37326401 (-) True adrb3a
XM_039802264.1 mRNA downstream 232879 37282580 ~ 37302980 (-) False got1l1
XM_039802263.1 mRNA downstream 232880 37290837 ~ 37302979 (-) True got1l1
XM_039804123.1 mRNA downstream 265598 37262175 ~ 37270261 (-) True prlhr2a
XM_039804253.1 mRNA upstream 10407 37552066 ~ 37555195 (-) True LOC120561226
XM_039804254.1 mRNA upstream 10407 37552066 ~ 37554377 (-) False LOC120561226
XM_039802378.1 mRNA upstream 113364 37655023 ~ 37684179 (-) False disp3
XM_039802380.1 mRNA upstream 113364 37655023 ~ 37683838 (-) False disp3
XM_039802376.1 mRNA upstream 113364 37655023 ~ 37683838 (-) False disp3
TU90264 other downstream 190776 37344461 ~ 37345083 (-) True G67523
TU90215 other downstream 384213 37147741 ~ 37151646 (-) True G67483
TU89851 other downstream 1682223 35843403 ~ 35853636 (-) False LOC120561089
unassigned_transcript_270 other upstream 885042 38426701 ~ 38426773 (-) True trnaf-gaa_5
unassigned_transcript_272 other upstream 893759 38435418 ~ 38435490 (-) True trnaf-gaa_7
TU90908 other upstream 1872223 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other upstream 1872223 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other upstream 1872223 39413882 ~ 39425293 (-) False LOC120560826

Expression Profile