RNA id: TU90815



Basic Information


Item Value
RNA id TU90815
length 490
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G67969
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 38782839 ~ 38785317 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtgacatcatgacttcacgTAAACATATCTGTACGTATGTCTACGGCGTCTACAGcagacgggttgggtttagataaagaagaacgggacagttgggtttagataaagaagaacgggacagttgggtttaggtaaagaagaacgggacagttgggtttaggtaaagaagaacaggacagttgggtttagataaagaagaacgggacagttgggtttaggtaaagaagaacgggacagttgggtttaggtaaagaagaacaggacagttgggtttaggtaaagaagaacaggacagttgggtttaggtaaagaagaacaggacagttgggtttaggtaaagaagaacaggacagttgggtttaggtaaagaagaacgggacagttgggtttaggtaaagaagaacggacagttgggtttaggtaaagaagaacgggacagttgggtttaggaaaagaagaacaggacagttgggtttaggaaaagaagaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90804 lncRNA downstream 65600 38718238 ~ 38718758 (-) True G67964
TU90793 lncRNA downstream 128384 38633760 ~ 38655974 (-) True G67954
TU90759 lncRNA downstream 337572 38445979 ~ 38446786 (-) True G67926
TU90748 lncRNA downstream 369822 38414205 ~ 38414536 (-) True G67920
TU90739 lncRNA downstream 398297 38362050 ~ 38386061 (-) True G67911
TU90819 lncRNA upstream 39974 38825291 ~ 38825971 (-) False G67972
TU90820 lncRNA upstream 39974 38825291 ~ 38825971 (-) True G67972
TU90821 lncRNA upstream 39974 38825291 ~ 38825971 (-) False G67972
TU90822 lncRNA upstream 39974 38825291 ~ 38825971 (-) False G67972
TU90828 lncRNA upstream 41353 38826670 ~ 38859201 (-) False G67976
XM_039802708.1 mRNA downstream 110466 38662069 ~ 38673892 (-) True ube2d4
XM_039802706.1 mRNA downstream 126825 38637016 ~ 38657533 (-) False dbnlb
XM_039803740.1 mRNA upstream 60370 38845687 ~ 38847953 (-) True zgc:153044
XM_039803762.1 mRNA upstream 581360 39366677 ~ 39394822 (-) False mn1b
XM_039803761.1 mRNA upstream 581360 39366677 ~ 39394822 (-) True mn1b
XM_039803696.1 mRNA upstream 626229 39411546 ~ 39447216 (-) False LOC120560826
XM_039802872.1 mRNA upstream 664616 39449933 ~ 39841426 (-) True LOC120560407
unassigned_transcript_272 other downstream 348868 38435418 ~ 38435490 (-) True trnaf-gaa_7
unassigned_transcript_270 other downstream 357585 38426701 ~ 38426773 (-) True trnaf-gaa_5
TU90333 other downstream 1229591 37538187 ~ 37554767 (-) True G67577
TU90329 other downstream 1237048 37538187 ~ 37547310 (-) False G67577
TU90337 other downstream 1239480 37535859 ~ 37544878 (-) False G67577
TU90908 other upstream 628565 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other upstream 628565 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other upstream 628565 39413882 ~ 39425293 (-) False LOC120560826
TU90912 other upstream 642964 39428281 ~ 39447195 (-) False LOC120560826
TU91941 other upstream 1150055 39935372 ~ 39935846 (-) True G68717

Expression Profile