RNA id: TU90854



Basic Information


Item Value
RNA id TU90854
length 470
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G67996
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39133038 ~ 39133869 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ccatctttgttgggagtcgcacatgctcagtacctaggtaaggactactagccagtcagaagcagagtatgagggtgtgccccgacagtagctaggtaaggactactagccagtcagaagcagagtatgagggcgtaccctgacagtagctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtgcctaggtaaggactactagccagtcagaagcagagtatgagggcgtaccctgacagtagctaggtaaggactactagccagtcagaagcagagtatgagggtgtgccctgacagtaactaggtaaggactactagccagtcagaagcagagtatgagggccctgacagtaactaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90840 lncRNA downstream 167329 38965753 ~ 38966009 (-) True G67986
TU90830 lncRNA downstream 215891 38855985 ~ 38917447 (-) True G67976
TU90828 lncRNA downstream 274137 38826670 ~ 38859201 (-) False G67976
TU90821 lncRNA downstream 307367 38825291 ~ 38825971 (-) False G67972
XR_005639394.1 lncRNA upstream 28850 39162719 ~ 39168563 (-) True LOC120559961
TU90907 lncRNA upstream 276370 39410239 ~ 39425293 (-) True LOC120560826
TU90910 lncRNA upstream 276370 39410239 ~ 39461568 (-) False LOC120560826
TU90922 lncRNA upstream 332683 39466552 ~ 39466977 (-) True G68052
TU91880 lncRNA upstream 379981 39513850 ~ 39514118 (-) True G68672
XM_039803740.1 mRNA downstream 285385 38845687 ~ 38847953 (-) True zgc:153044
XM_039802708.1 mRNA downstream 459446 38662069 ~ 38673892 (-) True ube2d4
XM_039802705.1 mRNA downstream 475805 38637016 ~ 38657533 (-) False dbnlb
XM_039803762.1 mRNA upstream 232808 39366677 ~ 39394822 (-) False mn1b
XM_039803761.1 mRNA upstream 232808 39366677 ~ 39394822 (-) True mn1b
XM_039803696.1 mRNA upstream 277677 39411546 ~ 39447216 (-) False LOC120560826
XM_039802872.1 mRNA upstream 316064 39449933 ~ 39841426 (-) True LOC120560407
XM_039802645.1 mRNA upstream 752734 39886603 ~ 39997858 (-) False LOC120560309
unassigned_transcript_272 other downstream 697848 38435418 ~ 38435490 (-) True trnaf-gaa_7
unassigned_transcript_270 other downstream 706565 38426701 ~ 38426773 (-) True trnaf-gaa_5
TU90333 other downstream 1578571 37538187 ~ 37554767 (-) True G67577
TU90329 other downstream 1586028 37538187 ~ 37547310 (-) False G67577
TU90337 other downstream 1588460 37535859 ~ 37544878 (-) False G67577
TU90908 other upstream 280013 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other upstream 280013 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other upstream 280013 39413882 ~ 39425293 (-) False LOC120560826
TU90912 other upstream 294412 39428281 ~ 39447195 (-) False LOC120560826
TU91941 other upstream 801503 39935372 ~ 39935846 (-) True G68717

Expression Profile