RNA id: TCONS_00075398


Basic Information

Item Value
RNA id TCONS_00075398
length 2276
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_037977
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33356651 ~ 33359044 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAGCCCACAGGGACAGGGCATGAGGAGGGAGGAGGAGGAAATACACTGGGGAAAAAACAGAACGTAGATGTGTTAGATCAGGAGTAGGCAATGCTGGAGTTAAACTCCAAACCTGATCAAACTTGCTTTCCTGTAGATTTCTAGTCATGGCACAGATTTTAACTAGCTTGTGAAGGTTATTTAATTAGCAAAACTCTGAGAGCAAAGAGCAAGGTTAGACCtgctggagatctacctttctgcaaAGCTCAATCCTGATCAAACAGACCTGAGTGTTGAGGAATACAGATTGTGATGATTACAGGGACTGAACTCTGCTGGTAtgtggatctccaggaacaggattgagcaccctattgtgcatttttttatgtgtGGGTTAAAAAACAGGAATTATGCTGTGTTCATTGTTATaccaaaaacatttacatttgcaataaaaaaaaaaaaaaactttaaaaaaacacattaagagaaaaactaaattaataactttgagggaaaaaaaactagCTTGAGCACATTTAACTAAGACTATATGTGAACTGAACCAGAGGCggacttagtgatttgggggtcctaagcaattccaggtatggggttttaaaaataagtaataacgtTTAAATCCTAATGGTTATAGAAAGATTTGCTCGAAATGGCATATGATAGAACATTTATGAAAGAGCTACATGATTGATGTAGACTGCTTGGCATTGGTTGGTGCCCCCTAAttccctattttttttttttttttttttggcagttatttgtatttttgtgacACACCTTATATCATTTGGTCAATTTTAGCCACAATGAGGTTTTGTGGTTTATTGAGAAACAATCTAAATCAATGAACAGGCATTCTCTTTTCATGTAACTCATTATCAGTTAATTTAGATCTTTTATTAAcccttaaaaacataaaaacataaagctTACAGATTTTGTATCAGATCTACAGTGTAAAACccaagtcaactttatcaaatgaaacaaATTGACTGAAACTTAATTCTACACATTTGAAAAGAGGTTGGATGTCAGTGTTGAGGGTAATGAGgtaattaaatatctcattagttcaacttaaatggagtaagttcacagtactcaaatagattcattttttaactcaaatagtttgttcTAATCAGTTTCCTCCaactgtttgagttgccttaacttgttTGGGTTTTGCAGTACTCAGTTGTTTTGAGTTCTCTtcctttattgggttttactgggctcaaattgcttcatttactcaaatggattaagttcacagtactcattaggaaaAGTTTTTGagcttaaatgatttgttgcaatcggtttcctcaaatgcttttagttaccttaacttattgggttttgcaGTGTAGGGTAGCATAGCCCAGGTTCAAACACTGACAGTAAATGTGTTCAGGTTTAAAAAGTAAGCAGTGTATTCACATCACATTGAACTTTAAACAGCCACAATGATGCATCTGTGTTAAATAGCACAGCATTGGTTTCCACTGGAAGTATGTGGTCTATTGCAGAGAATTGATGAGATTTATTCCTGTAATGAACTTTACAAAGGAACTACCAGAACTCTATTATAATGATAGAGAAAACGCTAGCCATGCAGCATAAGCAGTCACTTTGCAAATGAGTCGTGCTCGTTCTCCCAGCAGTTATGGGAAGATTACAGAGAACACAATCACAGACTGGAGGAATAATTTAATGTGTGGCCTCCCTCTGTTCTGCACATTAAACTTATGTTGATTAGAAAAGAGCAGATTAGAAATCACACAAAAACACTAGGTCTTGTTTGTTCCCGGACCTCCTATTAGTAGAGATGCTGTACAGTAAATTGATTACATTCTTTAATACGATGTTCTTATTGAGATCAGCTgaattgaagtttttttttttttttttgcagttataagATCAGTCAGTCATGTCATGGAAATACAACAAACCTTTAGCATCAAAACAGCAGGAATCATGTACTTACCGGCAATATTGATGATGAAACACATCACTGGCTTCTCTCAGCTGTGATTATTTAGCAGGACCTGCCGATCATCTTCAGTAAAGTTTCTCCTGGACACACAGTGCACCGAAGTAAATCCGTCAGTTCAGCCAACATGCCTATGTCTGTACCACATCGCTCCAAGTGGAAATATGAATGGATTAAAGGTGCCATCAGTCAGTTTGTGCTTTTCTCTGCACACATCAGCACTCCCCTTCAGAAAGCCATCACTTAATGGCAGAAAAATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075397 lncRNA downstream 153747 33201515 ~ 33202904 (-) False XLOC_037974
TCONS_00075396 lncRNA downstream 177635 33177648 ~ 33179016 (-) True XLOC_037973
TCONS_00075394 lncRNA downstream 234537 33110204 ~ 33122114 (-) True XLOC_037970
TCONS_00075395 lncRNA downstream 234978 33119224 ~ 33121673 (-) True XLOC_037971
TCONS_00074515 lncRNA downstream 236895 33118614 ~ 33119756 (-) False XLOC_037971
TCONS_00074529 lncRNA upstream 22676 33381720 ~ 33394953 (-) False XLOC_037978
TCONS_00074535 lncRNA upstream 399676 33758720 ~ 33781851 (-) True XLOC_037981
TCONS_00075399 lncRNA upstream 424511 33783555 ~ 33785153 (-) False XLOC_037982
TCONS_00074539 lncRNA upstream 425044 33784088 ~ 33785153 (-) True XLOC_037982
TCONS_00075400 lncRNA upstream 562510 33921554 ~ 33938391 (-) False XLOC_037985
TCONS_00074522 mRNA downstream 26864 33323104 ~ 33329787 (-) False XLOC_037976
TCONS_00074525 mRNA downstream 26951 33325212 ~ 33329700 (-) True XLOC_037976
TCONS_00074523 mRNA downstream 27703 33323110 ~ 33328948 (-) False XLOC_037976
TCONS_00074517 mRNA downstream 154412 33201906 ~ 33202239 (-) True XLOC_037974
TCONS_00074516 mRNA downstream 219661 33134882 ~ 33136990 (-) True XLOC_037972
TCONS_00074526 mRNA upstream 7639 33366683 ~ 33477588 (-) False XLOC_037978
TCONS_00074527 mRNA upstream 7659 33366703 ~ 33608427 (-) False XLOC_037978
TCONS_00074531 mRNA upstream 301920 33660964 ~ 33725972 (-) True XLOC_037979
TCONS_00074532 mRNA upstream 375806 33734850 ~ 33749556 (-) False XLOC_037980
TCONS_00074533 mRNA upstream 375924 33734968 ~ 33741629 (-) True XLOC_037980
TCONS_00074524 other downstream 27707 33324872 ~ 33328944 (-) False XLOC_037976
TCONS_00074520 other downstream 105645 33247366 ~ 33251006 (-) False XLOC_037975
TCONS_00074521 other downstream 105657 33249278 ~ 33250994 (-) True XLOC_037975
TCONS_00074519 other downstream 106572 33247363 ~ 33250079 (-) False XLOC_037975
TCONS_00074518 other downstream 107369 33247202 ~ 33249282 (-) False XLOC_037975
TCONS_00074528 other upstream 22205 33381249 ~ 33382466 (-) False XLOC_037978
TCONS_00074530 other upstream 79918 33438962 ~ 33439565 (-) True XLOC_037978
TCONS_00074537 other upstream 424511 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074543 other upstream 561888 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074544 other upstream 562420 33921464 ~ 33921571 (-) False XLOC_037985

Expression Profile

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