RNA id: XM_039802029.1


Basic Information

Item Value
RNA id XM_039802029.1
length 2510
RNA type mRNA
GC content 0.44
exon number 18
gene id tctn2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19251176 ~ 19255928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaaaaatgtataaaGCTGTGATTCGTTTAAGATCTGCGTTGCCAAGACATCACTTACAGTTTACAAATATGTCGACTTTATAATCTGAAGTAAACCAAATGGCTAACGTGGATAATATATTATTTCCCCAAGTATCCATTTCACGCCAGCTCACATGTGTTTTACTGTTCATTTCCTTGGCTCACACTCAAAACATTGTCGTTTTCCAGCCGTCCCGTCTCACTGCAACTGGACCAGCAGTCACTGCACTTCTGCTCGGAAACACATCCGACATCTCTTTGAATCTGAGAACAGTATCTCCATCTAATACAACaggAAGCGTTGGATCTCCATCATGTGAAGCTGAGGTAACACAGTGGGTGCTCACAAGAGAGCAGGTGGGAAAGACTGCAGTTCGGATTCAGCTGAGCCTGAATAAAAGTCTGCGTTTGTGTGGTAGGAATGAGGCAGACACAAACTGCTGTCCAAAGCCACTGTGTGTCCTGGAGACCCTTCAGGTGTCTGCCTGTGTGGGCAGTAAACCTCAGGCATCACTGCTGATCCAGGCCAAGATACACGCTCTGTTGGTTCCTGCTAATGCTGGATCTGATAATAAAACCGTCATTCCAAACCAAGTGTACCAACCACTGGGCTCTTGTCCCTGTGACCTCACATTTAGAGCCTGTGATTTACGCTGCTGCTGTGACAAGGACTGTTCCATTGAAGATTTGAAGCTGTTTGTGTCCCACTGTCTCCCAGGGCCCTTTGGTGGACAGGtctctcctgctccagattatCAGTGCTCTGTGCAGTCCTTTGAAAACTCCCCAGATTGGTTTCCATTTTTATGTGTCAATTCTCCACCTGAAAACAATCCTTACCTTGGGCTATTTTACCAGGGAAACACAATCACATCTAAACCTGGCCCATCCTTCCAAAGGCCAGTTTTGTCAGCTCCAGTGCCAGGTAGTGTTTATATACAAGGAAGTCCCATTTTCTTAATGAATGACCAGTACTTCACTGTTCCCCAGAAGGTGCTCGGGCGGTGTGTAAACAGTGCTCCTGTAGCATTTTTGAGAAATTTCAAAGTCAACTGTGTAACTTTGTTACGCTCCTGTCCAACTGGATCTCCCTTACAGACACTACCAACAAATTTGAGGACTAAAGTCAAGAATGGGCAAGGGGGTGATGTTATAGTGGATGTAATCGATGAAGTGGCCATTGACACAAGCCAGTTTATTTCAAGCACAGATGCCTCTTCAGATCAGGGACTAGCCTGTGAGAATGTGACCTTAGCACTGGATTACAAATTCTACTGGAAAGGAAATGGCATCACGAGTATCACACTGACTCACACTGTCGGGACTATCACTTTTAATAGGAGTGTTGCCATAACTACAAGGTATTCTGCCGTGTTTCTAAATGGAGAATTCATGGGTGAGCCCAACTCAGGGAACCCAGGTTATCAGGTGGGAAGGCCTGTTATTGCTGGAATTGTGGACAATTTGGACAATAATACAGGCTCAGTACAGAGGACGTCAATCAATCTTTGGAAACCAGTGAGTGATGGACTCTGTTCCACTGCTGAGATGAAACCAGTTCTGTTTGGGGAGAATTCAACATCAGGATGTCTGCTACCTGTCAGCCAACACAATCTGACTCAGTGTAGTCTCCTGAGAGAGACTGTTACTTCTCTCCAGGCTGCTTTGATTACGGCAACAAATGTGGCAAAGAGTGGAAACCCAGATCCTCTAACTATAACAGACTGGGTGAACATATCCTTTGTGACACATAACTCAAGCACAACTATGGAAGATACCATAAGTTCATGTCACAGGGTTCCATCCCACCAGCATATCCATGTTTGGAGTCTTATCACTGGCATGATAGAAGGCATACCTCAAAGGGATATCCGTGCTTTGCAAGTCAGCTACATCCTGTCTCCCTGGGCACTGGATTGTGGAGGAGGTGATGTCTCTCAATGTGTGGACCCAATGAAGACTCAGTTGTTTCCCATCACCTCCTCAGTCACCTTTACTGACATTCCTGTCAACACAGGACCACCAAAAACCAGgTTTCAGATCAACTTTACAGAGTATGACTGTAACAGGAATGATGTGTGTTGGCCTGAGCTCGCCTTCCCCATCACCAAGTATTATACAGGTGAGCCATATTCTCAGTCGCTGGCTAAGGGACTTATCTTAGTTTTCTTCTTTATCACTGCCTCGATTCTTGGGACTCCATGGAGACAAATCCGACAGGCGTGGAACTAGTGGCGCTCTCAAAAACTCTGAGAAAATGCTGAGAAAacgcaaagtaaaaaaaaatgtggaggAACACACAGATGGATGGGCTAGTGGGAGAGTGAGAGGCTAAACAAGATTAATTAAAatttctctgaaatgtaattACACCTTTTTACAATGACgttgtttataataatattgtttttacatGATTACTATATGTTTGTGGGAATGTAAATAGTTGTATTGGTGCcacattttgtaataaaaatatttttttcta

Function

GO: NA

KEGG:

id description
K19361 TCTN2; tectonic-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 97592 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 164314 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 164314 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 169522 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 268553 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 293482 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 299455 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 299455 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 319633 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 319633 19575561 ~ 19633642 (+) True G63015
XM_039802722.1 mRNA upstream 24251 19207779 ~ 19226925 (+) True limk2
XM_039804624.1 mRNA upstream 128701 19120145 ~ 19122475 (+) True cmklr1
XM_039803828.1 mRNA upstream 151572 19087797 ~ 19099604 (+) True sart3
XM_039803826.1 mRNA upstream 169576 19076561 ~ 19081600 (+) True tmem119a
XM_039803823.1 mRNA upstream 176834 19033085 ~ 19074342 (+) False LOC120560931
XM_039803344.1 mRNA downstream 858 19256786 ~ 19269028 (+) True atp6v0a2b
XM_039803343.1 mRNA downstream 13608 19269536 ~ 19296674 (+) True dnah10
XM_039802286.1 mRNA downstream 42627 19298555 ~ 19357146 (+) False emid1
XM_039802285.1 mRNA downstream 42628 19298556 ~ 19357146 (+) True emid1
XM_039802287.1 mRNA downstream 42628 19298556 ~ 19357146 (+) False emid1
XR_005639481.1 other upstream 570015 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 831586 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 835170 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 919946 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1241858 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 178979 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1221884 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1221884 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1420489 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2332948 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile