RNA id: XM_039802044.1


Basic Information

Item Value
RNA id XM_039802044.1
length 3085
RNA type mRNA
GC content 0.46
exon number 8
gene id marveld2b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11173019 ~ 11188211 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTAAACGCCAGCTGTTGAGTCGATAGTCGTTAATAATCCTACCCGTTCCAGATAGCTATAAAGCAACACACCAATCTTGTTTCAACAATCGGAAACTGGGAAATCGGGTGTTAGAGGAGACTATGAACGCATCGTGAGGCTGGTCAGACTTGCCAGCGAGCACAGAGTCCAGGCCGAATGTCTTCAGGAGGAGTTGGTTTTGTCACCAGGTTCGACCGGGTGCGGGAGATCCCACACTATGACCAGGTCCCTGTGGGCTCCTTATGGCAGGACTTTCCTTCGCCCCCGGAGTCCTTGCATGGAACAGTGCCTGCCATAAGCCTAGAcccccttccccctccccctctaccTAAACAGCCAGCTGTTGGCCCTGAATCCTTTTATCCCCCCAACGATAGTGAGCCAATGGAGGCCAAGAGTGACGTCATGGACATTGAGCCGGTCCACCGCTTCATTCCCGACTCTGTCAAGAACTTCTTCCGTGGCCACAGCGGTAACCGTGGCAGCAAAGGTTGGGCCATACACCCTCCTGCACCACCTCTACCTGCCCCTTACTCCTCTGCCCCCTCACCCAGTAAGAGAGGCAACCACCACACCACAGCAGGAGTCCCCTGCTCACCCCCCCACTCCGCACCTCCATCTCCGTCTCTTCTAGGGTCCTATAGGGACCCTTATGGCGGCTCTGGGGGCAGCTACACCTCTCAGAAGGAGCGAAACCGGCTGCTGCTGGATGCTGAAGCCTTCGAATCAGTATCTGCAGTGCCCACCAATCTCTCAGCCCTGACCTACCATGAGCGGGTGGAAGAATACCACCAGCGTTATGCCTACTTGAAGTCTTGGGCTGGCCTTCTGAGGATCCTGGGCtgtgtgcagctgctgttggGAGCTGCTGTGTTCGCATGCGTCTGTGCTTATGTTCATAAGGACAATGAGTGGTTCAATATGTATGGATACTCCCAGCCGCAGCTGTTTGGGGGGCTTGGTGGAGGTGCTGGTGCATATGGATCTGGGGGCAGTTACTACACAGGCCCCAAGACACCTTTTGTCCTGGTGGTGGCTGGCCTTGCGTGGATAGTGACTGTTATTCTAGTCGTTGTTGGGATGACCATATACTACAGAGCCATCCTTTTAGACTCTTCTTGGTGGCCACTTACAGAGTGTTCCATCAACATGGTCTTAGCGATGCTTTATTTAGCAGCAGGGATAGTATATGTGAGGGACACCACTCGAGGGGGGCTATGCTACATTCCGGTCTTCAATAACGGAATAAATGGGGCGTTTTGTCGGACCGAGGCCGGCCAGACAGCAGCCAttgtcttcctcttcatcaccaCGGTGCTCTACTTCATTAGTGCTGGAGTGTGTCTGAAGCTGTGGAGGCATGAAGCAGCCAGGATGAGGAAGGAGATGCTGGAACATGAGATGAAAACAATTGGATCATCAGTCCCTCTGTCTATACTGGGTCCAGACTCCAGGGCCTCTGAGCAGACTCCTCTCCCCACTATCCAGCCAGACATCATGGACGCTCCTAACAACTATGCAGCTGCTCCTCTGATGGCACTTGAGCCAGAGATCCTCAGAGGTCACATACCGGCTGGACACATCCCTAAGCCTGTCGTTATAGCCGACTATGTGGCAAAGTACCCCAGCATcagctcagaggaggagagggaccagTACAAGGCTGTGTTTAATGACCAGTACGCTGAATACAAGGAGCTGCACGCTGAGGTTCAGGCAATGGCCAAGAAGTTTGAAGAGATGGACGAGATAATGCAGAACCTTCCGTCCCGGCCTTCCAGTCAAatgGAGAAGGAGCGGATCAGTAGCATATTAATGGAATATCAGAGGAAGAAAGCTGACCCAACGTATTTGGAAAAAAGGGAGAGGTGTGAGTACCTAAAGAACAAGCTCTCTCATATCAAACAGAAGATTCAGGAGTACAACAAAGTGTAATTTGAACTGGAACGATAGTATTTAAACCACTGCAGTGAAACACTTTCATAACTCACCTGGAATTCATATGAAGTCTGCAacagtttaagaaaaaaatagtaGTGGGACTAAGCTGGGAACTGAACTGTATGTTTCTCCCTACCAGGCGAAAACTGCCCTCATAGATGGTATACCCACAATTGCTGATTGTATATATACCAttatcacatttatttttatttattttttatttaacctttatttaaccaggtatcGCAATGCCGACCTGGCTAAGAAAAGCATAAGCGTACAGGACAACATAcggtttcacattcaatacaatacaggaatacagaatacaaaaggctacataaagtgcagGTTAAGTAGGCATTACAGAGCCGGTgcaaagtgaggtgtaagtaagaTGAAGGATTAAAACAGGTGGACCTGCCATCACTGCTGTTAGTAATGTCATCATGACACAGAATATAATTTTCACAGGTCAACAAATCATCAGTGGAAATCAGtagaaatgtttttataaagagTAAGACATTGTCGAGAGCTGGAATGGATCAGGTGTAATCTAAATGTGTTCATTATATATACAAACAAACCCTACAAACCCTGATGCAAATCAATTTAAaggaacattttgggaaatatgctttgTTTTGCTGTTTTACCTGGATATAGCAAAATGAATATCAGTTTCATCACTGTGCGTCCAGTCTGGTAtgtgtttagcctagcttagcaatgaagactggaagcagagggAAACTGCTGCACTAGGTCCATCAGAAGAGACATTTTTAATACACCTCATTTGATGCTTGTGTTTGCTGTCAGCTGCTAGGAAAGAAACCATAATGACTCATACAAGAAATTAAATTATCTTTTCATCTGAGTTTGAGTAAGATTACAATCAAGCACATTTTGTAAAATGGGTGACTGTTTCTTTAACACCAGGTGTAAATGGGGTCTCAAAACTGGCTAGCTAGACATTCTGCCTGATTAAGGAAACTGATGTAAATAAGGCTGACTCAATGTTAATGAAGGCTATATGATTAGAgtaataattcaattcaattcaattttatttatagtatcaaatcataacataagttatctcgagacacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81410 lncRNA upstream 14840 11157934 ~ 11158234 (+) True G60698
TU81388 lncRNA upstream 53030 11119777 ~ 11120044 (+) True G60682
TU81312 lncRNA upstream 267445 10902061 ~ 10905629 (+) True G60620
TU81298 lncRNA upstream 320168 10812779 ~ 10852906 (+) True G60607
TU81440 lncRNA downstream 22454 11210665 ~ 11223962 (+) True G60722
TU81441 lncRNA downstream 23377 11211588 ~ 11214100 (+) True G60723
TU81448 lncRNA downstream 46136 11234347 ~ 11234580 (+) True G60730
TU81498 lncRNA downstream 300155 11488366 ~ 11544659 (+) True G60780
XR_005639578.1 lncRNA downstream 339838 11528049 ~ 11528755 (+) True LOC120561253
XM_039804113.1 mRNA upstream 420634 10748117 ~ 10752440 (+) False LOC120561144
XM_039804112.1 mRNA upstream 426121 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA upstream 426121 10726439 ~ 10746953 (+) False LOC120561142
XM_039803880.1 mRNA upstream 1192020 9927049 ~ 9981054 (+) False LOC120560959
XM_039804537.1 mRNA downstream 5276 11193487 ~ 11206112 (+) True oclnb
XM_039804538.1 mRNA downstream 5331 11193542 ~ 11206112 (+) False oclnb
XM_039804304.1 mRNA downstream 30740 11218951 ~ 11231887 (+) True gtf2h2
XM_039804305.1 mRNA downstream 30782 11218993 ~ 11231887 (+) False gtf2h2
XM_039804291.1 mRNA downstream 86807 11275018 ~ 11277484 (+) True ankrd34bb
XR_005639564.1 other upstream 420634 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 420634 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 420634 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 426126 10726446 ~ 10746948 (+) False LOC120561142
TU81096 other upstream 1192085 9927107 ~ 9980989 (+) False LOC120560959
TU81647 other downstream 737972 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 1732936 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 1732936 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 2919272 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 2953231 14141442 ~ 14142050 (+) True G61338

Expression Profile