RNA id: XM_039802045.1


Basic Information

Item Value
RNA id XM_039802045.1
length 1860
RNA type mRNA
GC content 0.49
exon number 6
gene id tor2a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34809084 ~ 34814495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCGTTAAGCGTTCATGGACGCCTTCCTTGAAGTAGAAAAACTACAGATTGACCGGTTGTCCTTAGGAGAAGGTCCATTCGGTTTTTCTATCTGCCAGCAGGCAGCCAAAATGTTGGCCATCCTGTCTGTGCTGTTCTTATGCCTTTCTAATCCGGTCTGTGGCGTTTTTCAGAAACTTTACTGCAGCATATCAGAAAGCTGTGAGTGCGACTTTAAGCCAAATATCAGAGACCTGGAGTGGGATCTCTACAAGAATGTTTACGGACAGCATCTGGCCCAGGAAATTGTGTCCGAGGTGGCCAGGTTCCTAAAGAATAAAAGCCCTGAGCGGCCCCTGGTGCTGTCCTTCCATGGCTCCTCTGGGACGGGAAAGACACTCGTCAGCTCCATGCTGGGAAATCACCTGTACGGCTCGGCGATGAGCAGCCCGTACGTCCACCAGTTTGTTCCCACGCTGCACTTCTCCTTACCTGACCGGGTCAAGGAGTACAGGGAGGAGTTGAAGAGCTGGGTGCAGGGCAACCTGACGGAGTGCGCTCGCTCCGTCTTCTTTTTCGAGGAGATGGAGAAGATGCCTCCGGGTCTCATCGACGTCTTGGAGCCCTTCCTGGGTCCTTCCCACATTGTGGTTCGCACTAACTACCGCAAGGCTATCTACATTTTCATCGGCACCACAGGAGAGGAGGTGATAAAAAAATTGGCTCTGGAGAGCCGGCAGGCCGGACGGGACAGGGAGGAGATCAAGTTAGCCGAGTTGGAGGAAGCCATCGCACGGGCGGTTTACAACAGCACAACAAGCGGCTTCTTCCAGTCCAGCATCATCCAGCAGAAGCTCATCACGCGCTACGTTCCATTCCTGCCGCTGAGCCGACGCCacgtggagcgctgcgtccacTCGCAGCTCTGCCAGCGGGGCAGCTGCGGCCGCAGTGACGTGGTGGAGGCAGTAGGGGGCGACATGATCTACAGTCCCGTTCAGGGACAATACTTCTCCAGCACCGGCTGTAAGGCCGTCCCCGCCAAAATCAACCTCTTCCTGTGAGCCAAGGCGGGGACTGaagtgttgattttttttcaaggaCTGAAAGGGAAACTCCTTCTGAGGTGAgtcagtgaagagaaacagATCCCAGTTTCTGTTTCTTCCACATGGAGGTAAGAGCAGCATCAAGGACGCCTCCTGCACTTGGAATCAAGGGGAATGGAACTCGCAGCCTCCCGAATTCAATGCAGGTTTGTGCTGTCAGTGCAGAGGTTCCCTGAAGGCATCCTCGATACTAACTGTGAGCACACGAGAGTTTATTCTCTAAACATTAGTCAGTGTCTAAAGCAGGAGCCACGCTCTACCTCAAACCCAACTCTACCGTTAATTTATGAACTCTAAAGGTACAGGTACAATGCGCTTTCAGAGTTCCTGCATGCAGCAGTTAAAGAGGGAGATGAAATCTCAACCCTGTATTTCCGAAATGTTGACTTTCCATGAGCTTGAAAATGGGTATGTTAGCTGGATTAGGATACATATTTGGCTTAATTTAAAGAGTTGGTAAGTGAGCACTCATGAACTCACTCAACTTGTGTGAAAGTGTAAAAAAACCCCGCTAGAATCATAAATACAAGTTTTCACTTAGCAACACTTTAAGCGATTATGTAATTCCATGTGAGATTGAGAAATTTAAGAAACATACCAGAGCTTTTAAGGGAAGAAATTTAGGCATGCCATCATTGGCGCTCAACCAAATCcaatcaatatacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttcctttttattttcatgactatttacattgtagattctcaccgaaggcatcaaaactatgaa

Function

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K22999 TOR2A; torsin-2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89323 lncRNA upstream 299471 34508142 ~ 34509613 (+) True G66769
TU89226 lncRNA upstream 322333 34486538 ~ 34486751 (+) True G66695
TU89223 lncRNA upstream 352335 34456490 ~ 34456749 (+) True G66692
TU89217 lncRNA upstream 369156 34430942 ~ 34439928 (+) True G66689
TU89177 lncRNA upstream 527155 34187830 ~ 34281929 (+) True G66652
TU89399 lncRNA downstream 1094 34815589 ~ 34816327 (+) True G66830
TU89406 lncRNA downstream 14397 34828892 ~ 34829654 (+) True G66834
TU89403 lncRNA downstream 47004 34861499 ~ 34864690 (+) True G66832
TU89494 lncRNA downstream 185783 35000278 ~ 35002196 (+) True G66907
XR_005639572.1 lncRNA downstream 441166 35255661 ~ 35258072 (+) True LOC120561203
XM_039802732.1 mRNA upstream 3137 34774749 ~ 34805947 (+) False sh2d3cb
XM_039802731.1 mRNA upstream 3137 34781399 ~ 34805947 (+) True sh2d3cb
XM_039804034.1 mRNA upstream 35278 34765930 ~ 34773806 (+) True LOC120561070
XM_039802646.1 mRNA upstream 216368 34588133 ~ 34592716 (+) True LOC120560310
XM_039803766.1 mRNA upstream 245933 34551118 ~ 34563151 (+) True p2rx7
XM_039804035.1 mRNA downstream 71043 34885538 ~ 34895629 (+) True LOC120561071
XM_039804036.1 mRNA downstream 137007 34951502 ~ 34952477 (+) True LOC120561072
XM_039804547.1 mRNA downstream 232349 35046844 ~ 35059631 (+) True LOC120561428
XM_039804548.1 mRNA downstream 232349 35046844 ~ 35059631 (+) False LOC120561428
XM_039804549.1 mRNA downstream 232349 35046844 ~ 35059631 (+) False LOC120561428
TU89395 other upstream 35384 34765946 ~ 34773700 (+) False LOC120561070
XR_005639528.1 other upstream 281679 34514010 ~ 34527405 (+) False cfap157
TU89079 other upstream 1032686 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1696268 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 2237325 32571688 ~ 32571759 (+) True trnap-ugg
TU89401 other downstream 47004 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 47004 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 47004 34861499 ~ 34864266 (+) False G66832
TU89504 other downstream 232360 35046855 ~ 35059618 (+) False LOC120561428
XR_005639497.1 other downstream 708170 35522665 ~ 35547463 (+) False LOC120560625

Expression Profile