RNA id: XM_039802064.1


Basic Information

Item Value
RNA id XM_039802064.1
length 2843
RNA type mRNA
GC content 0.58
exon number 8
gene id LOC120559985
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14515799 ~ 14532759 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGTGTCACACCAGACGATGCGTTGACTGagcggaggagaagaagaagaaagcctCTCCCAGCCAGCCAGCCGTCCTGCCTGCTGCATGGAAGAGAAgctgaggaggaagagaagcagGGAGGAGCTGTTTCTGTGCTGAGCTGACCTCCATCCTGATGATCCACAATCTCCTCCACCCAACACCTCCGACCTGAACGCACACCCTACCCACCCTCTCTGCCAGCCCTGACCTCATTGTTTCCTCCAGAACAACATGGATCTGAAACGTTTTGGAGGTGATATCTGCAGGATCCCTGACACTTAAACACTCTGAACTGATCCCACCCTCTTCCTCCGTCAACTCTGGCTGGTCAGGACCGTCTCCTCCTAGCCGTAACTTCCTGTCCCGTCCTCCTCTGGACCGACGGCGTCCACCATGTCTGAGGGGCTGCTGCAGGTGGAGATCCCAGACTTCGGCAGCAGTGTGCTGGGTAGCCTGAATGAACAGCGGCTGCTGGGTCACTACTGTGATGTCTCCATCCTGGTGCAGGGCCAGGCCTTCAAGGCGCACCGGGCTGTCCTTGCTGCCTCCTCACTCTACTTTAGAGACCTGTTCAGCTCTGCAGCCGACTCTtcgtcctcgtcctcctcccAGGCGGTGTTCGAGCTGCCGTCCTCGGTGACGCCGACGTGTTTCCAGCAGATTCTGTCCTTCTGCTACACAGGGCGCCTCAGCATGGCCGCCAGTGAGCAGCTGGTGCTCATGTACACCGCTGGCTACCTGCAAATTCAGAACATCGTGGAGCGAGGCATGGAGCTGATGATGTTGaaggcctcctcctcctcctcctcctcacctctCTGCTGCGACTCACAGACAACCTCAGCTGACGAGCTTGGGGGTTTTGACACCCCGATGGTCCAGCAGCACAGCGCCCCCCAGCTGCAGGAGGCCAGTCCAAACCAGCCGTCCCTGAGCCCCGAGGAGCTGCTGCTAGCCGTCAGCAGGATCAAGCAGGAGAGAGCCGACACTCCTCCTGCTGAGAACGGAAGAGGAgcagcaagaggaggaggagaggaggccaGAGTGGACATTTCTGTGGACCTCCAGTCCTCCAGGAGCAGTGCTCTGTGTTACCTGGGTGCAGGGGGAAGTTTGGTTCCGGGGCTGCAGTCCTATCTGCTGGCGAATGGGGGGCGTTCCAGTCCAGGAGGCTCCAGCCTTCCCACAGACTCCCCTCCCTCTCAACCCCCCACcgaggaggagctggaggaggattACTACGGGAACACCGTCCACTCCGGACTTTACCAACACATTTACGGACATCCGGGAAACCCCTACCTCCAAGAGAAGATGGAGATGCTATCCCTTCCATTGGCTAACGAGCGTCGGCCCTGTGTGCTGGTTGGTCGGGACAACATGGCGCTCCCTGCCAGTCTGATTAGTCAGATTGGGTATCGTTGCCACCCGTCGCTCTACACTGAGGGAGACCCAGGAGAGAAGGTGGAGCTGGTGGCAGgttcAGGTGTTTTCATGACACGAGGTCAGCTGATGAACTGTCACCTGTGTGCCGGAGTCAAACACAAGGTGCTGCTCAGGAGACTGCTGGCTACGTTCTTTGACAGAAACACTCTGGCCAATAGCTGTGGGACAGGGATCCGCTCCTCTACCAATGATCCGAGCCGAAAGCCTCTGGACAACCGAGTGTTAAACACCGTCAAactctaCTGTCAGAACTTTGCTCCTAATTTTAAGGAGAGTGAGATGAATGTCATTGCGGCCGACATGTGTACCAACGCCCGAAGAGTCCGTAAACGTTGGCTCCCCAAGATCCAGTCTCTCCTTCCTGACAGCCTCCCTACCTCCTCCCACCCCCGCAAGGctaagagaggaggaggaggtcagggtggaGGAGGTCAGGGAGGGGAAGCGGCGGTGCAGCGCAGCTGCAGCCCCTTCGAGCTGGACCTGCGGCAGCTCGGCGCGTCCTACCTCGGACTGGAGGCTCCGCTGTTCGCCGAGCGACGCGAGAGGGAGGCCGcgggggagaaagaaagagagaaagaggcccCAGCCGCCCTCCTGCCGCACCTGCAGTTCGCCGTGTCCCGTGGGGCAGGAGCAGGAGCAGGTGGGGGTCAGGCAGAGGAAGAGCTGATGGGCGGCGAGGCAGACGGGGGAGGGAGGCTACAGACTGATCAAACCCCAGACCTCCCAGTctccctgtcctcctcctcttcttcctcctcctcctcacaccCCTCCCCTCAGCCTGCAGAGCCCACTCCTCCTCACAGGGGATTGGCCGACACAGAAGAGAGGGGGGCGGAGGCTCTGGAAGACAGCCAATAAGCATTCTATTGCATCTGCCTAcctgtatgtaaataacacaataGCTACCTGTCCCCCccccatctgtctgtctgccctaCCTGGGACAGAAAGCTCTCCTGTCtacctttctgtctgtctgcctctacCTAGGAATGACAGTTATCCTGTCTGCTTCTACCTGGGAAAGACAGTCCTCctttcttcctgtctgtctctacctgtctgtttgCTTCTACCTGGGACAGACAGTCCTCAtttgtccctgtctgtctcttcccCTACCTCACTACCTATCCACCTGTCTACCTCTCTGCCCCCAGTTTGTCTACCTTTCTGTTTGACctacctctgtctgtctgtatgtctgctcctttacctgtctgtcctcctgtctgtctgtctgctcggCTCAACTGCATGTTAACAGCCTCCTGCAGTCCAGCACACAGGCTTATAGCAAAaggactgatgatgatgataatattcAATCTGATAACGACAATAAAGCTTCTTAATAATCAGA

Function

GO: NA

KEGG:

id description
K10486 BTBD14; BTB/POZ domain-containing protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82515 lncRNA downstream 30262 14485242 ~ 14485537 (-) True G61586
XR_005639560.1 lncRNA downstream 49445 14460926 ~ 14466354 (-) True LOC120561033
TU82509 lncRNA downstream 49469 14460991 ~ 14466330 (-) False LOC120561033
TU82490 lncRNA downstream 91988 14417175 ~ 14423811 (-) True G61566
TU82488 lncRNA downstream 96894 14411397 ~ 14418905 (-) True G61564
XR_005639535.1 lncRNA upstream 21444 14554203 ~ 14556499 (-) True LOC120560922
XR_005639534.1 lncRNA upstream 26327 14559086 ~ 14559729 (-) True LOC120560921
TU82547 lncRNA upstream 96852 14629611 ~ 14630973 (-) True G61601
TU82599 lncRNA upstream 266161 14798920 ~ 14799149 (-) True G61647
TU82581 lncRNA upstream 269805 14802564 ~ 14867657 (-) True G61631
XM_039803998.1 mRNA downstream 59487 14454088 ~ 14456312 (-) False asgrl1
XM_039803997.1 mRNA downstream 59487 14454088 ~ 14456312 (-) True asgrl1
XM_039804212.1 mRNA downstream 67784 14445463 ~ 14448015 (-) True LOC120561207
XM_039802545.1 mRNA downstream 115832 14392607 ~ 14399967 (-) True hnf1a
XM_039802546.1 mRNA downstream 115832 14392608 ~ 14399967 (-) False hnf1a
XM_039804218.1 mRNA upstream 2509 14535268 ~ 14547863 (-) True qsox2
XM_039803814.1 mRNA upstream 33272 14566031 ~ 14580163 (-) False ddx31
XM_039803811.1 mRNA upstream 33272 14566031 ~ 14580163 (-) False ddx31
XM_039803812.1 mRNA upstream 33272 14566031 ~ 14579817 (-) True ddx31
XM_039804331.1 mRNA upstream 49325 14582084 ~ 14599142 (-) False ak8
TU82089 other downstream 926467 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3326058 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 6113233 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6628396 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6931280 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 406216 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 411737 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 416000 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 418743 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 434920 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile