RNA id: XM_039802066.1


Basic Information

Item Value
RNA id XM_039802066.1
length 1409
RNA type mRNA
GC content 0.55
exon number 2
gene id ch25hl3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7161301 ~ 7169700 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGGTTGTAGTTTGTAATTAACTGAATGCGACCATGAGGGGAATTATACATTTACCTACTGCTTGCGtcaacattaaaaaagaaattggaaAGAAATCGGATCTGGggctcctccccccccctccaccgTATAGTGAGAAAACCTGAGCAGGAACATCACCACTCGCCTCCAGGAAGAAGCGGAGGAAAACCACCTAACTTACCTTTCTTTCCCCTGAATATGTAGCCTAGGAGAGTTTATCCAGGACCGATCAAAGGGAAGTCATTTAAAATCACATGGGGATAATAGCGTTACAGTTGTCAAACAAACTGCTGCATTGTtgcaacatttttattattttgtaagaATTGGTGATACCCGCGCTAAAAGAAGATAGTAGACAGTAGATGGTGAGGGGCGAGTCGGGATGAGTGTGCCCTGCTCAGGGCATGGAGAGGCGGCGCCTCTCCTCCAGGGGCTGTGGGAGCGCGTGAGAGCGGGCCGGGAGGAAGTCCTGCTCTCCCCTTACCTGCCCGCGCTCTACGCCTTCGTGACGCACGTGCTGCTCTGCGCACCTTTCCTCGCGCTGGACGCGCTGGGAAGCGTCTGCCAGCGGGTCCGCTCGTGGAGGATCACCGCAGGCTCGGGTCCGCCGCCGCCTCTCCGCCGCTGGGTTGGCTGTTTTCGGAGGGTGCTGTACCGATACCTGACCACCGTCCTCCCCGCCACCGCGCTGTTTCACACGGTGCGGAGCCCCGCAGTGCCGGAGCTGGCTCCATCCTGCTGGCAGCTCTTCGTGGAAGTCTTTGCGTGTTTACTGCTGTTTGACACGCTCTTCTTTATGTGGCACGTCTGCATGCACAGGTTTCCCTGGCTCTACCGCAACATCCACCAGCTGCACCACCGGCACCACATCCCCTTTGCTCTGGCTGCCCAGGACAGTAACTCGGGCGAGCtgctgtctctgctgctgctggctctgAGCAGCGCCTGGGTGCTGGGCTGCCACCCGCTGAGCGAAGCCTTCTTCCACCTCATCAACAGCTGGCTGGCGGTGGAGGTCCACTGCGGCTATGACCTGCCCCTGGCTCTGCACAGGCTGCTGCCCGGTCTGGGAGGAGCCCGCTGCCACCAAGCCCACCATACTCTCCTCAGCGTCAACTACGCCCCCTACTTCACCCACTGGGACCTCCTCTTTGGCACATTCTGTGCTCCGGTGAAGCGTTCACATCCGGAGTGACAAAAACTGTTGCACATATGAAGTGTCTTCCCTAGGCTTGTAGAAGACTTATATTTTTTTTGGGAGCATCATCATTttcatatctgtgtctaaaaccttggaaaagctagagcaggtAATAACTAGCACTAAAGagcttaaccctcctgttgtccttgtccttgacctgttttcaaagtttacatGT

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80255 lncRNA downstream 12495 7101573 ~ 7148806 (-) False G59756
TU80254 lncRNA downstream 54265 7101573 ~ 7107036 (-) True G59756
TU80240 lncRNA downstream 78088 7025606 ~ 7083213 (-) True G59743
TU80224 lncRNA downstream 131888 6976605 ~ 7029413 (-) False G59734
TU80216 lncRNA downstream 131888 6981020 ~ 7029413 (-) False G59734
XR_005639537.1 lncRNA upstream 195732 7365432 ~ 7366200 (-) True LOC120560930
XR_005639545.1 lncRNA upstream 196557 7366257 ~ 7367921 (-) False LOC120560966
XR_005639544.1 lncRNA upstream 196557 7366257 ~ 7367921 (-) True LOC120560966
TU80304 lncRNA upstream 196571 7366271 ~ 7367921 (-) False LOC120560966
TU80309 lncRNA upstream 254463 7424163 ~ 7424364 (-) True G59802
XM_039803522.1 mRNA downstream 219565 6895202 ~ 6941736 (-) True hk2
XM_039802025.1 mRNA downstream 1099439 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA downstream 1099440 6048963 ~ 6061861 (-) False tbx1
XM_039804097.1 mRNA downstream 1494092 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA downstream 1494092 5643204 ~ 5667209 (-) True tango2
XM_039803504.1 mRNA upstream 13113 7182813 ~ 7212011 (-) True erlin2
XM_039803947.1 mRNA upstream 51141 7220841 ~ 7223583 (-) True LOC120561006
XM_039803946.1 mRNA upstream 51841 7221541 ~ 7223583 (-) False LOC120561006
XM_039804558.1 mRNA upstream 112716 7282416 ~ 7285425 (-) True znf703
XM_039803193.1 mRNA upstream 326811 7496511 ~ 7510835 (-) True LOC120560561
TU80230 other downstream 164445 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 637627 6522759 ~ 6523674 (-) True G59563
TU79962 other downstream 734490 6426206 ~ 6426811 (-) True G59521
TU79961 other downstream 734490 6426250 ~ 6426811 (-) False G59521
TU79960 other downstream 734515 6426206 ~ 6426786 (-) False G59521
unassigned_transcript_243 other upstream 341521 7511221 ~ 7511291 (-) True trnag-ccc
TU80421 other upstream 414386 7584086 ~ 7584519 (-) True G59881
TU80531 other upstream 709724 7879424 ~ 7887403 (-) False anapc7
TU80745 other upstream 1231322 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 4019442 11189142 ~ 11189741 (-) True G60715

Expression Profile