RNA id: XM_039802090.1


Basic Information

Item Value
RNA id XM_039802090.1
length 1901
RNA type mRNA
GC content 0.52
exon number 12
gene id ccdc125
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3869033 ~ 3889655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGAAGTGATTCACCTAGCAGCCTTTCTATTAGTATGCGAAAGCTGGCGATAGTAACCGTTGACCGTAAATatgaatattaacagtctatggtagtAACACTGGGATTCATCTTTACTAAGCGTTGTGTTTGTCCGTGTATCGCTGGAGGCGGGAAAGCACCAAGGAATATCGCGCTACTGCTTCAAAGTTCCAGTTTGATGGGTGCAGATGCAGGAGACCAGTGAGGCCCGCAGCCTGGATGATGATATGGTGGAGGGAGACCTGGGGGACGGGATGGGAGTCAAAGCAGCACCCAACTCCACCAGGAAGAAGAGCCAAAGCTTTGTAGGACTCACAGAGACGCTGCTGTCCCGAACAGAGCCGGGAGAGGCGGCCTGGATCCCCGGACTGAAGACTgcagagacacagcagcagagagcccgCTGGAAGCTGCCACTCTCCGCAGGCACCCTGGTTGACCTGTCAAAAGACGAGCTGAAAGACCGACTACAGGAAGCCACTGagGTGATAGACGTTTTATGCTGTGAGCTGGAGGTGGCACATCGGTACCTTGAAGGCAAATACGAAGCTCTGAAGATCTTACAGGGGAAGGCCATTCTTGACAAAGCCACGAGTCACACTAAAAGTCTGCTGCAGAAAAGTGAGGCGAGGGCCAAAGCTCTGGAGAAGGAGGCGAACAGCTTGCAGTGGGAACTCAGCTTCATCCAGGTCCAGATGAAGAAGTCTCAACAATCCTGGGAGCAGAAATACAACAGAATTTGGAGTGAGAACAAGACTCTGACCGACAaactggaggagagagagagagagatccagaaGCTCCGGGCAGAACATTCCActcTTAGTCGGCAGTGCGTGGAGCTTCTCTCCATGCTGAGTGTGAAGGAGCAGAGAACTTACCAAGAAACCAAACCTCACTACAGCCCAGAGAGAGACGCAAGTCTTCTGGAGctggcagttttgggggcgTGCCGGTGTCTCGGTGCTGCTGACGCGTGTCTGTGCAGTCGTGCCGCGGCTGGCAGCAGGAAGCAGCTGGTCCAGCTCCAACAGGAGctgGATGCACAGCGTCTGAAGAGAGAGGAGGCGTGGATGGTCGCCGATGCTTTTCGCATCGCCTTTGAACAGCAGCTGAGGAAACGGAGTGAGCACTTCCTCCTGCTGGCTGAAGCCAACATCCTGAAGTCTAATCAGGGCAAAGCTGAAGgTGCTAACAGCAGTCCTTTAATCAGTGTAAGCCAGAGGTTGAGAGGATTGCTGCCATCCAAGATGCCTGAGACTGAGACCGAGACTGAGACTGAGACTCTCTACCGACTGCTGGACTTGCTGAATGACAAGGAGGAGGCCCTGGCCCACCAGAGGAAGGTGAGCATCATGTTAGCCCACAGTGCAGACGAGCTACAGAGACAGTTGCATCTGGATTCACATTGCCGGCCAGCAGACCCATCAGAGAACCAGAACCAGCAAAGTTCTAATACATCAGAGTCGAAGATACAAGCCCAAGTCTCATCAGAGTCCAACATCCATGCACAGCAACAGCTGCCAGATTCCCAGCATCAGCCGGGACACCCAGCGCGTCTGTCAGAGTCCAGGACTGAACCACAGGAGCTGTCAGACCCATCGCCGTCCAACAGCCAGCCACAGTCCAACCACAAAAACCACAAGTCTGAAATCCAAAAATCCGACCAACCAGAGTCCTGATCCAGACAGCAGACTCCTGTCTCAGACAGAGACGCAGCAGTCAGGGTATTCTAAAATAGGAGGACGTGGTTTTGGCATACACCACCTGGCTCAATGCAAACGCCTAGTtcaaaaaaagacaatgttgtGCACATCCATGTAGTTGCTGatgcatgacaaaaaaaaagaatgttcaAAGAAAAGTGAGTGAAGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639569.1 lncRNA upstream 31354 3837307 ~ 3837679 (+) True LOC120561177
TU79263 lncRNA upstream 65936 3799038 ~ 3803097 (+) True G58986
TU79211 lncRNA upstream 262724 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 312854 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 345412 3522846 ~ 3523621 (+) True G58941
TU79324 lncRNA downstream 1390 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 6015 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 71405 3961060 ~ 3961319 (+) True G59042
TU79389 lncRNA downstream 243193 4132848 ~ 4133064 (+) True G59093
TU79435 lncRNA downstream 418264 4307919 ~ 4329460 (+) True G59132
XM_039804168.1 mRNA upstream 457 3848479 ~ 3868576 (+) False rad17
XM_039804172.1 mRNA upstream 457 3848479 ~ 3868576 (+) False rad17
XM_039804167.1 mRNA upstream 457 3848572 ~ 3868576 (+) True rad17
XM_039804169.1 mRNA upstream 457 3848572 ~ 3868576 (+) False rad17
XM_039804171.1 mRNA upstream 457 3848572 ~ 3868576 (+) False rad17
XM_039804152.1 mRNA downstream 309868 4199523 ~ 4208499 (+) True si:dkey-3h3.3
XM_039804151.1 mRNA downstream 311196 4200851 ~ 4208499 (+) False si:dkey-3h3.3
XM_039803676.1 mRNA downstream 336381 4226036 ~ 4227032 (+) True LOC120560812
XM_039803329.1 mRNA downstream 381849 4271504 ~ 4343670 (+) True pdzd2
XM_039803330.1 mRNA downstream 381849 4271504 ~ 4343670 (+) False pdzd2
TU78941 other upstream 989289 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3656663 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 227624 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 534486 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 542516 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 543013 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 640455 4530110 ~ 4531165 (+) False mrpl41

Expression Profile