RNA id: XM_039802095.1


Basic Information

Item Value
RNA id XM_039802095.1
length 2068
RNA type mRNA
GC content 0.46
exon number 18
gene id cdc45
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26395798 ~ 26402661 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATGTTCAGATTTGGCGCCACATTTCCAACACGGAACAGCAAAGAAAGCTCCTTgacagaaaaccaaaacaacccGTTGTTCATGCCATTCTAGCGTTATTTTACCCGGTCTGTCCTCatcttaaaacattttaaattttgaaaatgtttatcaCGGACATAAGGAAGGAATTTTATGAAGTTGTTGCCAACCAGAGAGTCGCACTCCTGGTGGCGTCAGACATCGACGCTCTTTGCGCCTGTAAGATACTACAGGCACTGTTCCACTGTGACCAGGTCCAGTACACACTTGTGCCAGTTACAGGCTGGCAGGACCTTGGCACTGCCTTCCTTGAACATAAAGAGCAGTTCCGGTATTTTGTTCTCATCAACTGCGGGGCAAATGTTGACCTTCTTGAGATGCTGCAGCCGGATGATGACTCCATCTTCTTCATCTGTGACACTCACCGGCCCGTAGATGTGGTCAATGTCTACAATGACACCCAGATAAAGCTGCTAATCAAACAGGATGATGACCTTGGTGTGCCCCCATATGATGATATATTTCGAGATGAAGATGACGAGGAAGGAGGTGACTCTGGAAATGAGAGTGATGAAGGCTCAGAGCCGTCTGGGAAACGGAGAAGATTTGATGAAGGGGCAGTTGAGAGGAGAATTGAAAGACAGCGAGCGAAGAGGGAGTGGGAGGCACGAAGGAGGGAAATCTTGTTTGACTATGAGCAGTATGAATATCATGGGACTTCTGCATCAATGATGTTTTTTGAGCTGGCATGGGTGTTAACTAAAGACACAAAGGACATGCTCTGGTGGGCCGTCATTGGACTAACAGACCAGTGGGTTCATGATAAAATCACACATATGAAGTATGTAACCGACATCGCCACAATGCAGCGACACGTTTCCCGGCATAACCACCGAAACGAGGATGAGGAGAACTCTCTCTCTATCGACTGTATGAGGATCTCCTTTGAATACGACCTCCGTCTAACCCTCTACCAGCACTGGTCCCTGTACGAGAGCATCTGTAATTCCTGTTACACGTCGTGCAACTTCAAGCTCTGGACGTTAAATGGCCAAAAGAAACTCCAGGAGTTCCTAGCTGACATGGGGCTACCTCTGAAGCAAGTGAGGCAGAAATTCAACTCAATGGACATGTCGATCAAAGAGAACCTGAGGGACGTGATTGAGGAGTCTTCCAATAAATACGGTCTGAAGGACATCCGCATCCAGACATTTGGTGTTCACTTTGGTTTTAAGAACCGTTTCCTGGCCAGTGACATGGTGCATGCTACTGCTGCCCTGCTGGAGAGCACTGAGAAAGATGAGAGCGACAGTGACAACTTCATCAAGGCTCTGGACTCTCTTTCCAGGAGTAACCTTGAGCGTCTACATTCAGGCATTGAACTGGCTAAGAGGAAGCTGATGGCCATCCAGCAGACTGTGGCCAGCTGCATCTGTACCAACCTCATCGTGTCACAGGGACCCTTCCTCTACTGCTACCTCATGGAGGGAACACCTGATGTGAAGCTCTTTTCTAAGCCCATTGCCTTGACTCTGCTCTGCAAGTACCTCCTGAAGGCTTTTGTCCATTCTACGAGAAATAAGCGCTGCAAATTGCTTCCACTCATCATGGCTGCTCCCAAGGACGTGGAGAAGGGAACTGTGATTGTTGTGGGAATCCCACCTGAGTCTGAAACATCTGACAAGAAGAATTTCTTTGGTCGAGCATTTGAAAAGGCTGCAGAGAGCACCAGCTCCAGAACCCTTCATGACAACTTCGACACTTCGATAATTGAACTGAAGACGGATGACAGGAGCAAGTTTCTGGATGCACTCATCACCCTCCTGTCATGAGAGGGATTGGAGCATGAGTTTTGGGTCTTGAACAGTGTAAGTGCTGCTACTGTTCACATCTTTATGTCTGACATGTACAGCTTCACCAGTACAAGAACTTTATCCatgattttaatgtttttgtttgttttaatcaattttgtgtgtatattgtacagtctttctgtaaatgtgtgtaaGTCTTAGTTTTGCTTTTAAATTCTTGAAACATT

Function

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process

KEGG:

id description
K06628 CDC45; cell division control protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86725 lncRNA upstream 11955 26371634 ~ 26383843 (+) False nsd3
TU86705 lncRNA upstream 73842 26303850 ~ 26321956 (+) True G64764
TU86587 lncRNA upstream 466640 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 467206 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 473410 25922163 ~ 25922388 (+) True G64663
TU86797 lncRNA downstream 91674 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 109804 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 129091 26531752 ~ 26533420 (+) True G64836
TU86814 lncRNA downstream 132351 26535012 ~ 26535307 (+) False G64838
TU86813 lncRNA downstream 132447 26535108 ~ 26537695 (+) True G64838
XM_039803887.1 mRNA upstream 1397 26384409 ~ 26394401 (+) True plpp5
XM_039803583.1 mRNA upstream 14304 26359120 ~ 26381494 (+) True nsd3
XM_039803585.1 mRNA upstream 14304 26359120 ~ 26381494 (+) False nsd3
XM_039803586.1 mRNA upstream 14304 26359120 ~ 26381494 (+) False nsd3
XM_039803584.1 mRNA upstream 14304 26359120 ~ 26381494 (+) False nsd3
XM_039804403.1 mRNA downstream 13229 26415890 ~ 26447513 (+) True zgc:63587
XM_039804404.1 mRNA downstream 13239 26415900 ~ 26447513 (+) False zgc:63587
XM_039804406.1 mRNA downstream 56965 26459626 ~ 26470702 (+) True sept5a
XM_039804407.1 mRNA downstream 70113 26472774 ~ 26475318 (+) True gp1bb
XM_039804408.1 mRNA downstream 73527 26476188 ~ 26488401 (+) True dhx37
TU86550 other upstream 480269 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 699228 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1561167 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1561178 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2702507 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 10208 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 91674 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 91674 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 91674 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 211576 26614237 ~ 26642481 (+) False cltcl1

Expression Profile