RNA id: XR_005639400.1


Basic Information

Item Value
RNA id XR_005639400.1
length 1762
RNA type transcript
GC content 0.45
exon number 9
gene id LOC120560007
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8431537 ~ 8434672 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCAGTAGATGAGACCTCACCTCAAGTGGTTTCAGATCAGGTGGCATCCACATCCTCTGCCATATCCATTAATTCATTCCCATCGCTCTCAATTGCTCTAGTACAAGATGAGACTGTGGCTGAGAGTACCCAAGCTCAAAGTGTGGTTGCAAATCAGgcTCTTCAAGAATGGCGAGCAATACGTGCTCAGCAAGACCAGGAGTATAATACAAGTTTGTTGGTGGATCAGGAGAAGGAGAGGAAGAAACTAGCCTATCAGGCCTGTGAGGAAAGACGTCAAAAGGCTATTGAGGGAAGACGTCAGCGACTGTCTGCATGTGAGGAACCCTCAGATGGGGCCTTGATCAAATTTAAATATCCAAATGGACACATCAATGGGAGGAAATTCAGCTTGTCAGAGCCAATCCAGATCTTGTTTGACTTTGTGGGACAAGTGAAATTGCCAGTGAAATCTTTGTAGTGCAAGAAGCCACATCCTCAAGATCAATTGAGAGCAGTTCATCCGGGTCAATAATGGATCATGGCATTAAAGCATCCTCAACTCTATATGTACTTTGGTATTCAAATCAGGATGTACAGGAAATTCTCTCGGATCAGCAAAATGATGGATCTCATGCCCTAGACGATACATCTCATGGTCACTCATTGCTGGCTAAGACCTCCTCCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCAGCCAAGTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCACCCAGCCAACTCTCTCTGTGCCCTCTCTCCAGCCACTGCTGTGTGAGACCTCCACCCGCTCACTGCTGTCTGAGCCCTCCTCCCAGCCACCACTCACTCTGTTCTCACAACCACAAGAAATCCTGACTCTTCATGATGAACCATCACTCCCTCCATCTGCCCAGGAACCAATCATTATTTTTGATGAACAAGATGAGACAGTTACACAAAATCAGTCTCATGTATCAACACATCACCTCAGAGGACCTGTGGATGAGATTGATCTACAAAccatattgaaaaaaaatggtCAGCAAAGTTGACGGAAGCTTCTGTCCAACAAGCAACCAAATAAATGTGTGCAGGGATAATGTTTTACTGTGTAGCCTGCGGGCGTTCAAGCGTAGGTTCTTCAACCCTGAAGCAAAATTGGATGTTGTGTTTGTGGATGAAGATGACAATGGTGAAGGGGCAGTTGACGAAGGCGGCCCGACAAGAGAGTACCTAAGGCTGTTAATGAGGGCTGTCCACCAGTCCAATATCTTTGAGGGCCATGAGAAAGACCGGCAGTTGTCTCTTGATACTCAAGGTTTCATCTGTGTTGTATCATCttgcttttatttgtttaattttgccTTGATTTGTTAATTCTCAGTTAGGATTTTTCCATGATTCTtcatttctttgtctttttgtactTGATGTTTCGAAAGGTGCAATACTTATTATTCGTTGTAGCACTAATATTAATCATAGCATTTTAAGGTATTGCATTTTTAAGAAGCATTACAACAGAGCAATATTTTACGGTTATGTCTTTAATTTTAGCTTTGCAGACTAAACTTTACACATGAGTGGCAAAAATGATTGCTGTGTGTGTCGTCCATGGAGGAGTCGGTCCACACTTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639402.1 lncRNA upstream 307 8428953 ~ 8431230 (+) True LOC120560009
TU80748 lncRNA upstream 7794 8423189 ~ 8423743 (+) False LOC120560006
TU80747 lncRNA upstream 13687 8417642 ~ 8417850 (+) True G60147
TU80713 lncRNA upstream 58986 8372266 ~ 8372551 (+) True G60120
TU80698 lncRNA upstream 104584 8325053 ~ 8326953 (+) True G60109
XR_005639401.1 lncRNA downstream 75 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA downstream 2281 8436947 ~ 8437592 (+) False LOC120560008
TU80778 lncRNA downstream 43913 8478579 ~ 8478887 (+) True G60174
TU80781 lncRNA downstream 48229 8482895 ~ 8483122 (+) True G60177
TU80786 lncRNA downstream 156587 8591253 ~ 8591473 (+) True G60182
XM_039802097.1 mRNA upstream 3792 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 3792 8423712 ~ 8427745 (+) False LOC120560006
XM_039803746.1 mRNA upstream 28968 8397481 ~ 8402569 (+) False LOC120560868
XM_039803748.1 mRNA upstream 28968 8399670 ~ 8402569 (+) False LOC120560868
XM_039803745.1 mRNA upstream 42419 8387822 ~ 8389118 (+) True LOC120560867
XM_039803055.1 mRNA downstream 30505 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 375888 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 427304 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 427304 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 487617 8922283 ~ 8933253 (+) True zgc:113436
TU80548 other upstream 396176 8028192 ~ 8035361 (+) False cux2b
XR_005639609.1 other upstream 732286 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 733492 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 738328 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 740745 7690674 ~ 7690792 (+) True LOC120561492
unassigned_transcript_244 other downstream 9788 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 10952 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_246 other downstream 12114 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_247 other downstream 13279 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_248 other downstream 14478 8449144 ~ 8449215 (+) True trnaw-cca_6

Expression Profile