RNA id: XM_039802100.1


Basic Information

Item Value
RNA id XM_039802100.1
length 6567
RNA type mRNA
GC content 0.53
exon number 61
gene id col27a1b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29514026 ~ 29583569 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTACAAATCTCTTTTCCCTCGATGTCAGCTGAGGGCGACAGAGGGAGGTGTTCCCCCCTTTTCCCGGTTCTCAAGATTTTCCTCAGTCCACAATAAACTTTCATTTTGGAAAGtggacaaacacatacacacaacggCGGTCGTCATCTTGTCCTGCAACGGTTCCCCGGAAAAGGTGGACTAGACTCGACTTGACGATGTTCATTGTATTTACAAAACGCGCGAAAGGAAGAAGGAACTAACAAACATATAGGAAGCGCACAGGTGGAGCTCTCcggagggtcttttaaagtctGGTGTCATCTTCTAGAAGCAGGAGACTACTGGGACAAGAAGAGACAAGACAATGACAGAAAGCAGCCTTTTGACAGCTGGCTAATCCCGCAGTGTTTGattagttgtttttgtttttgcttcctTGCACGTTTACTCCTCGCGCGAACCTCAAGGAACACCTGGAATGGAAAAACTTCATCTGGCTCGTCTGGACTGTAAAAACTCCCAAGAAAGAATGAAGTAACCGCAATGGAGCCGGACAATGCCCCGTACTCCAAACACAAAAGCACTGGAGTCGGGGGGAGAGTTCTGATTCTTTGGACTATACTCTGTTGCACCTGCTCTCTAAAGTTAGCACAAGCACAAGATGTGGATGTCCTGCAGCAGCTTGGGTTTTCTGGGCGAAGATCAGACGGGTCGTCATCTTCAGGCGCTCGATCCATCCCTAATGGCATTATCCCCTTCAAGTCTGGAGTTATCCTCACTCCCAGGGCACGTATCCAGGTGCCTCTGCGTACTGTTATCCCTGCTACCTACAGCTCCACCAATCTCTCCCTGATCCTCAGTTTGTCTGTTCATCGCATCAACAGCGCTTTTCTTTTCTCAATTCTGTCTAAAAAAAGGAAACTGCAGCTCGGAGTGCAGTTTGTACCAGGGAAGGTGGTGGTACACGTGGGGCAGAGGAGCTCTGTGAGCTTAGACTATGATGTCCACGATGGCCAGTGGCATAGTCTGGCTTTGGATATCCAAGGCCACCAGGTGCTCTTACACACTTCTTGTGGAAAGAGAAGTGCACATGCAGATTTGCATTCAAAAAAAGAGGTGGCTCTGGATGCAGAGGGCTCTTTCCTGCTGGGCAAAATGAACCACAACTCGGTGCCGTTTGAAGGTGCCATCTGTCAGTTTGACATTTATCCCTCTGCTAAGGCAGCTCATAACTATTGTGATTACATTAAGAAACATTGCAGAGAAGCCGACACGTATCGGCCCATGTTTCCACCCTTGCTACCTCTATTTTCCACAGACCCAAACATCACTTTCACTCATATAACTCCACTGTCATTGACAGAGATATCCAAAAAGGCCAGGAGACCTACTTTGGCCTTGACTGAGGAAAGCACCAGGACTACGATTCTTGTCCCAACTGACCGCTCGCTGATGCTGAACAAAACATCTGTGTATCAGACTGTGAGCACTCCAAAACCTGGTGCTGTGTCTGTTTCTCCACCGTTTCATCCAGGGTTGGAAATTCCGTTTAAGTTTCCGACTCAAACTGCTACTACATCTCTTAGGATCAGCATGACACCACCAAACCCTAAACCAACTTCACATGGCAGTGCTGGAAAGAACACAAAGCAAGGCGATACTATTTCTCAGAAACCTTCTGTCGAAAGAATGGATTTACCTGCTTCCACCCGACCATCCGAGATAAAGCCAAACCTCCACATCGCAGCTGCTTTTACGCAGGGGTCTCCTTCAAACGCCCACCTTCCCCAGAAAAATCACTTGACCACAGTAGCTCCAAAGAAACCTGAGCCAAAAGTGACCAGTGTGCAGAATGTCAAGCCCACCTCACTTATTCCAGTCACTCCAGCTGCAACAGATGGCTTCCAAACATTTGACCTGGCACCGACCCAGTTCTCACTGCTGGCTGGACCACCTGGACAAAAGGGAGAACCAGGACCGCCGgGCCTCCAAGGACTTCCAGGGTTGCCAGGAAAGCCAGGGAAGAGGGGTCCAAGAGGTCCTCCTGGCCCCCATGGAAACCCTGGTCGTCCCGGAACTCCTGGAGTAAAGGGCCAAAAAGGAGATTATGGACTGTCACCTGGTCAAGCCCCAAAAGGACTAAAAGGAGAGCCTGGTGTCATGGGCCCCCCTGGACTGCATGGCCAAGATGGACGAAAGGGACAAAAAGGCCATCCTGGTCCTTCTGGTCTCCCAGGTGAACCTggTAAACGGGGAGATGATGGAAGCCCTGGGGCCAAAGGCTATCCTGGCAGGCAGGGTTTACCTGGGCCTGTAGGGACAATGGGGCCAAAAGGAGTCAGGGGTCACATTGGCATCCCTGGGCTTTTTGGCCTTCCTGGTCCTgatggagagagaGGAATTCCTGGCGTTCATGGGAAGAAGGGCAAGATGGGTAGGCCGGGGTTTCCTGGTGACTTTGGAGAGAGGGGACCTCCTGGCCCTGATGGGAACCCAGGTGAACTGGGATCTCCTGGCCCATGTGGAGTCCCTGGTCTTATCGGAGACATGGGCCCTGTCGGAATAATGGGCTTACCAGGAGCGCCAGGACTCAAGGGAGTACCTGGAAACCCAGGGGAACCAGGACTGAAAGGTGATAAGGGGGATGTTGGCTTACCAGGAGAGCCAGGGGAGTGTGGATTCCAAGGGGACAAGGGTACGCGTGGCTCACCTGGGTTGCCGGGTCCTTGTGGAAAACCTGGGCCACAGGGCAAACCTGGTGAAAATGGCCCTGATGGTTTACCTGGCCCTCCTGGCCCAGAGGGATTTCCAGGTGACATTGGCCCACCAGGACAAAATGGCCCCGAAGGACCTAAGGGAAAGCAAGGCATCCAAGGTTTGCCAGGTCCAAGAGGAACACCTGGACTTCAGGGTGATGAGGGACCAGTTGGGCCCACTGGACCCGCTGGACTCGAGGGCAGGCCTGGGAGGCAGGGATACCCTGGACTGACAGGCCCAGATGGACTTAAGGGCGAGACCGGGATAACTGGCGAGGTCGGAAAGCTTGGCGAGAGGGGTCTACCTGGTTTTGTCGGGCTTGTTGGAGAGACTGGCATCACAGGTGAAAAGGGGGATCGAGGCAAAACAGGCGCCCCAGGGCCGCCAGGTGACACGGGGCCGATGGGTCACACTGGTATACCTGGAGTGACGGGGCCACCTGGACTGCAAGGGATTCCAGGGCCTCTTGGTTCACAGGGATCCATTGGCATCAGAGGACCCAAAGGCAGGAGGGGTCTGAGGGGTCCTGATGGCCCAGTGGGGGAGAAAGGGTCCACTGGAGTAAAGGGCCCTGATGGTCCACCAGGAAAATTGGGCCTCCCCGGGGAGATGGGAAAGCTTGGCGAGCCAGGTGAAGCTGGGCCTAAGGGATTTCCAGGTGTTCACGGACCCTCGGGACCTCCAGGGGCCAAAGGAATTGCAGGAGAGCCAGGACCAACAGGGCCACCAGGAACGATTGGGCCACTGGGGGAGATGGGGCCGAGGGGGCTGCCAgggaaggatggagagagaggactGTCTGGTGAACCTGGAGAGAAGGGTGCAATCGGTCTACCTGGCAACATCGGGGAGCAGGGTTTGATTGGCCAGAGAGGTGAGCCAGGCATTGATGGGGACCCTGGACAGAGTGGATCTGATGGAGCCAAGGGGGACAAGGGGGATGCTGGTCAAGAAGGCACTATAGGAGACAGGGGGGAAATCGGTGTAAAAGGAAAAGAAGGACCTCTTGGATCTCCCGGACTGGTTGGTGTAAGGGGTCAGGAGGGTAAACCTGGCAAAATTGGTGAAAGAGGAAAACTAGGAGAAAAGGGGAGCAAGGGTCACCAAGGCCACCTGGGTGAGACGGGGTCAATTGGTGAGCAGGGAGTAATGGGGTTTGTCGGACAGAAGGGGACGAGAGGAACCATCGGGCCAGTGGGTGCCCCGGGGAGAATGGGCCAACAAGGAGATCCAGGCATATCAGGTTACGAGGGTCACATGGGAATGCAGGGCCCCCTGGGACCTCCTGGGCCAAAAGGTGAAAAGGGTGAACAGGGAGACGACAGCAAGGTAGAAGGTCAGCCAGGTCCCCAAGGTGACAGAGGTCCTCCTggaaacagaggagagagaggagagccaGGTGACCTCGGACACATTGGTCAAATAGGTGTTGATGGAAAGAGAGGTGAAGCTGGTGCCCCAGGGCTTCCTGGACATCCTGGGCCAAAGGGACAAGCAGGGCTGAAAGGATCCAAAGGTGACCAAGGTCAGATAGGAAAATCAGGGGCGAGAGGCACATCTGGGACCAAAGGACCACCAGGTCCAGAGGGTCCTCTTGGCCCACGGGGAGTTGTTGGCAGGGAGGGAATTGAGGGCCTACCTGGCATGGATGGGCTGCCTGGTAAAGATGGAAATAAAGGTGTCAAGGGGGAGCAGGGAGAAGATGGAGAAGTGGGCTTACCTGGCAAACCTGGGCAGCAGGGTACAACTGGTGTGACAGGGCTTCCTGGAAGTCAAGGCTCCTTTGGACAAAAGGGTGAGAGGGGTCTTCCAGGCCAAACTGGTGCATCAGGGGAAAAAGGCTGGATCGGCGGGATGGGATTGCCAGGAAAAAGAGGCGACCAGGGACTTAAAGGGCAACCAGGGGATACTGGTGAACAAGGATTTCCAGGGGTGTTGGGCCTGTTTGGACCAAAGGGACCCCTGGGAGACATTGGCCCAGCAGGGATACAGGGACCAAAAGGACCACGTGGTTTGTTGGGTATGGAGGGAGCTTCGGGCCCCATTGGCATCATTGGCCCCAGCGGTCATCCTGGACCCCGGGGTGACAAAGGAAGTCGGGGGGAGACGGGGTTACAAGGACCAAGGGGACTTCGTGGCCCTCGTGGACCACCTGGACCACCAGGTCTTCCCAGCTCTGCCCTCTCACTTAGAAATGAGGCTCTTGGTGCTGCCTTTCAAGTCCTCATCGATTCCCATGCTTCACTCAGGCCAGAGCAGAACTATCAGAGCATGGACCTGCCAATGTTAGACCAGAGCACAGAGATCTTCAAGACCTTGCAGCATCTCAGCACTCTGATCCAGAGTCTCAAGAACCCGCTGGGAACCCGTGATAACCCTGCACGAATCTGCCGAGACCTGTACAACTGTGAACAGAGGATGTACGATGGCACCTACTGGATCGACCCTAACCTCGGCTGCCCTGCTGACACTATTGAGGTGTTGTGCAACTTCACTGGTGGAGGACAGACTTGCCTGAAACCTATCACAGTATCCAAGTTGGAGATAGGAGTGGGTCGTATCCAGATGAACTTCATCCACCTTTTGAGCACTGAGGCTGTGCAGCACATCACCATCCATTGCCTCAACACACCAGTGTGGGCAGCAGGACCCTCCCTGCAGCATTCAGCGGGGGCCGTGAGCTTCAGGGcctggagaggagagaagattcAGCCAGGAGACCTCCTGGAGCCGCTCATACCCAGGGACGACTGCTGGATCAAAGACGGCCGCTGGCATCAGACCCACTTCGTCTTTCAGACCCAGGACCCAAACTTACTCCCCATCGTCGATGTGTACAACCTGCCGACCACAGAACCTGGCGCACGCTATCACCTCGAGGTTGGACCCGTGTGCTTCTTATAGGGCCCTGAGGAAGGGCCGGGAACAATCCTCAAAAGGAGTGACTGCATGGAGGAGGGTGGACGAGGGGGTCTTGCTTCTGTGGTTTCCAGAACaacagaaccccccccccccccctatttTCTCTCTGCAAAATATGCTGGGACTGCAGAAACAGGAGGGGGCGCCAGAGAAAGAAGGCCCATTGAAAATGCAGAGATAAGACTTTTAGCACTAATCAGCCTATGGAAAACAATTATTAGCTTCTCTTTCAGAGACTTGTTTGTGTGATACAAGACCTgaacagcccccccccccctttggaAGAAAGTAATATGAACGTCTCACTCTGTCATCTCTCGGACCATGTTGTATCATATTTTCTTCACGGTCTGCTAACCCGATTTTGCAAAAACCTAAAACGTTCAAAAGTGATCTGTACAGAAATATGGAACAGTTACATCTGCAAATGCAATAATTCCTATTGTAATGTTGAAGTATTATTTATacatgtgtatgtactgtatattgtaatATAAAGTGCAATAGTTATTGTTCCACAGCCTTCAGGCATATACAGTATCAACATCATATCACTCATTCAGGTATACAGTGTGCCTCAGACACACAGGTGCACTGTCTCCaggtaaatctttttttttgagCCTCTTAATAAACTGTCTAGTGCTGACTTTATACCGATATCCTTACACAAACTGCTGTGTGGTACTTTCCATGTTAAAATGGATCGAAGCTTTCCACAGTGTGAACCGAGACAAGTGTGTCAAGATGCTACCTCGAACTGCACCTCTTCATCTCGCAGCAAACAAAGACGTTACCGGATAGAATCTGGGATGACACAGAGGTGACACCTGGTGCTGCAACAGTTGACACTCGTCTGATAAACTCTTGTCAGCTCTCACTAAAGCTATGTCTgtgctttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639509.1 lncRNA upstream 382811 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 408418 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 415714 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 511847 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 666780 28845626 ~ 28847247 (+) True mboat4
TU87931 lncRNA downstream 5438 29589007 ~ 29591364 (+) True G65713
TU87952 lncRNA downstream 188070 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 228403 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 352324 29935893 ~ 29936995 (+) True G65745
TU87967 lncRNA downstream 354048 29937617 ~ 29937843 (+) True G65747
XM_039802188.1 mRNA upstream 10076 29496780 ~ 29503951 (+) True LOC120560080
XM_039802189.1 mRNA upstream 10076 29496780 ~ 29503951 (+) False LOC120560080
XM_039804028.1 mRNA upstream 18885 29493252 ~ 29495142 (+) True LOC120561062
XM_039803047.1 mRNA upstream 123243 29382377 ~ 29390784 (+) True LOC120560482
XM_039802108.1 mRNA downstream 23669 29607238 ~ 29620658 (+) True hscb
XM_039803741.1 mRNA downstream 453983 30037552 ~ 30058804 (+) True scarf2
XM_039803743.1 mRNA downstream 485842 30069411 ~ 30071555 (+) True selenoe
XM_039803742.1 mRNA downstream 488195 30071764 ~ 30074597 (+) True zgc:112294
XM_039803680.1 mRNA downstream 603279 30186848 ~ 30211492 (+) False fbxo21
TU87830 other upstream 162274 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2212257 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2856058 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2871546 26614237 ~ 26642481 (+) False cltcl1
TU86793 other upstream 3017766 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639517.1 other downstream 603279 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 663318 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 664370 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 664414 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 990517 30574086 ~ 30578159 (+) True G65899

Expression Profile