RNA id: XM_039802108.1


Basic Information

Item Value
RNA id XM_039802108.1
length 1200
RNA type mRNA
GC content 0.42
exon number 6
gene id hscb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29607238 ~ 29620658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCTTACTCCGCCAAGACGACGGATGGCAGTGTGGTGCTTTTAACAAACGTAGAAGAAGAACGCTCTTCCGCCATCTCCATTGACATAAGGCTATCTCTCTGGAAGAAAGTTGTTGATGTTTGGACAGTAAGAGGAAGATCATGTTTTGATTGACTGCACAACGGCTCTAAATCGTGTATTTTAATTTCGGAGATGTTGCCATTTAACTCTTTGCGGATTGTGTGCTTATCCCGGGCTTTAGTGCACCCAAATTGGCCGATGTCGAACAGACAGTCTGTTTACAAAACTGTTACATGTTCAGCACATTTTATGTCTATCAGCTTTCTCAAGGACACATGGAACAGCAACATGCACCTCAAATCACTGGGAAAGGAAAGGAAGCTCATTTACTACAGTAACCCAGTCAGTTCACCCAGGAATTACTGTACAGGTCAAGTCCAACAGAACTGCTGGAACTGCAGACAGCCTCTTGACACAACACCTGCATTCTTCTGCATGTCATGCAAAGTAGTCCAGCCCCCAGAAGAAGGGACAtcctattttaaaataatgaatTGTGACTACACATtcacactggacacacacaaactgcagaAAAGATACTTGCAGCTCCAGCGGTCTCTACATCCAGACAACTTCAGCCAGAAATCTGTGAAAGAACAGGAGTATTCAGAAAGCCACTCTGCTCTTGTGAACAAAGCCTACCAGACTCTGCTTAAGCCTTTGAGTCGTGGTCTTTATATGCTGGAGCTGGAGGGGATGCGTATAGAAGAGGGCACCGACTCCGGGGCTGATTTGGAGTTTTTAATGGAGCTGATGGAGATCAATGAAGCCCTTGATAAAGCTAGGACTCCAGAGGAAGCCAATAAGATAGGCCAAGACACAAAAGGGAAACTGGCAGTCTTGACAGAGGAGATAGATGCTGCCCTTCTTAGAGgaGAGCTTCAAGCCGCCAAAGCCCTGCTTTCCCAAATGAAATACCATGCAAACATTGAAGAGAAAGTGAAGGAAAAACTTTCTGAATTCATGTAATTTACCCCCTGTTTAGTATccctttattttatatttttagctAATTAAAAAACTTTTTGTAGATAAGCACACACATCATTGTACATTTGTTTTGGGATTATGTAAATCTATTGTTCAAGTTGAAtaataaaactacttttaatGCATAATACACAACTGAATTAAT

Function

GO: NA

KEGG:

id description
K04082 hscB, HSCB, HSC20; molecular chaperone HscB

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87931 lncRNA upstream 15874 29589007 ~ 29591364 (+) True G65713
XR_005639509.1 lncRNA upstream 476022 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 501629 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 508925 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 605058 28985613 ~ 29002180 (+) True G65473
TU87952 lncRNA downstream 150981 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 191314 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 315235 29935893 ~ 29936995 (+) True G65745
TU87967 lncRNA downstream 316959 29937617 ~ 29937843 (+) True G65747
TU87968 lncRNA downstream 317196 29937854 ~ 29938145 (+) True G65748
XM_039802101.1 mRNA upstream 23669 29514026 ~ 29583569 (+) False col27a1b
XM_039802100.1 mRNA upstream 23669 29514027 ~ 29583569 (+) True col27a1b
XM_039802188.1 mRNA upstream 103287 29496780 ~ 29503951 (+) True LOC120560080
XM_039802189.1 mRNA upstream 103287 29496780 ~ 29503951 (+) False LOC120560080
XM_039804028.1 mRNA upstream 112096 29493252 ~ 29495142 (+) True LOC120561062
XM_039803741.1 mRNA downstream 416894 30037552 ~ 30058804 (+) True scarf2
XM_039803743.1 mRNA downstream 448753 30069411 ~ 30071555 (+) True selenoe
XM_039803742.1 mRNA downstream 451106 30071764 ~ 30074597 (+) True zgc:112294
XM_039803680.1 mRNA downstream 566190 30186848 ~ 30211492 (+) False fbxo21
XM_039803679.1 mRNA downstream 566190 30186848 ~ 30197488 (+) True fbxo21
TU87830 other upstream 255485 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2305468 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2949269 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2964757 26614237 ~ 26642481 (+) False cltcl1
TU86793 other upstream 3110977 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639517.1 other downstream 566190 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 626229 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 627281 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 627325 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 953428 30574086 ~ 30578159 (+) True G65899

Expression Profile