RNA id: XM_039802112.1


Basic Information

Item Value
RNA id XM_039802112.1
length 2175
RNA type mRNA
GC content 0.49
exon number 3
gene id foxb2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20353242 ~ 20381491 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCCTCTTGAAGAATCTCCCCGGCGACTGTCGTCACCGCGGACGATGCCCCATCATCCCCTGCGTCCTGCTGCCCGTCATGATGGACCACTCGCAGAATGCTGGACTCCAAGATACCTCACTGTCTCCCCGGGCAACTTAGCGTCACATCGCCGGCGGCACAGCACCGGCACACACACCCTACCTGACGTTTCCTTCTGgagcacatagacacacataTGTCTGGATAACAGATAATAGAGCCAGCGACCTGCGGGGGTCTTACAAAAACGGCACTCGGCGAGTGGGAGCATCGCACAAGAGGAGAGgagcacacaccacacacagacagcgaACAGACAGTGAGCTGGCCCGCACATCCTTCAACCGCTGCGGAAACCGGAGGAAACTGAAAGAACCTCTTAACTTTTACGCACAGACTGACTTTTACGCACAACGCCAAGAACATAAATAGACAGAGAAAAGTCTTCAGAAGAAACTTTCTTGAGATGCAGGAGCCTCTCACGGATCTTACCTGACAGCAGCGGGCCTTTAGACTACACTGTATTAATCGATAGAACGAAAATTGACCAGCTTCTAATCTCATGGCTCAGGACTTTGGAACAGATCCGTCAGATGGAGACTGATAtgaaaactgtgaaatttgctcCTTAAATTATATCCTTTTAAATATAACGTTAAAACTGTTTTATTTAACAATTCAACCTTCTAGTAAACAGTAACCAGTCATGCCTCGCCCTGGGAAGAACTCTTACAGCGACCAGAAGCCCCCATATTCCTACATATCACTGACAGCGATGGCTATCCAGAACTCATCCGAAAAGATGCTGCCACTGAGTGACATATATAAGTTCATCATGGACCGGTTTCCATACTATAGAGAGAATACACAACGGTGGCAGAATTCCCTGAGACATAACCTCTCCTTTAACGACTGCTTCATCAAGATCCCTCGGCGGCCTGATCAGCCCGGGAAAGGCAGCTTCTGGGCGCTGCACCCGGACTGcggtgacatgtttgagaacgGCAGCTTCCTGAGGAGAAGAAAGCGATTCAAGGTGCTGCGCGCTGAGCATATGGCCTGCAAGAGCTCCCCGATGATGCATTACtttcaccatcaccaccaccctGGCAGCAAGCTGGGCACAGCATCCGGCCCCCATGACCATGCAGCCGGCCCGGCAAGCACAATGAGTCGGCTCCCTCACTTTCAGGGTTACGGGGGCATTACTTGCGCACAGTCTGGGGGGTTTAAACACCCATTCGCGATCGAGAACATTATAGGACGGGACTACAAGGGTGTGATGGCCAGCGGGCTCCCCCTCACCTCGGTCATGCACCACCTGGGTTACCCGGTGCCCCCGCAGCTCAGCAGCGTGGTCAACTCCATGTGGCCGCACGTCGGGATGCTGTCGGAGTCCATGGGTAGCGTGCACGTACCCCCATCACCCGAGTACGCGCCCTTCAGCGTGTCAGCAAAGGGCCTGTACCACAATGCCAATGGGCAAACCCTGCCCGCCGTTCCTGTTCCAATAAAACCCACCCCATCCCTGGGTCCCGTGCCCAGTCTGACGGGGCTGCAGTCCGGACCGGCCCAGCTCTGCTCACCGGCCTCAGTGATGGAGAAAAGCGATCTGCTGGAAGGGAAAGGCAACCCTCTACACCCGGCTCTCCTGCTGTCCTAACCGGGTAAATTGCGGGTCATTTTTGAAAAGTAACGCAAACAAGAAACACATTGTTATTCAGCAGCATCATAGTTTAAGTTAAGTGCAGCTGTAGGAGAGTTGTAAAAAATAAGGTTAACATTGTGCTGTGTAATGAGTTTTTCATTAGACCCATGTTGATTGAAATCATAATTTATTTGCACAATTTGTGAGAGCATTTGCCACATACTGGAATGTGGCACTGATACATACAATCAGAAAAGTAGATATGCTGAACCCAAAGAAAGCTTTGATTTAGGAGACAACCAGTCTTAAATTCTTTCCAAATGTAAACTAACAActctatttatatttttgctCTTATTCTATTTGTTCTATTTTAATCTATGGCAGGCCTGTCGGCTAAAGACAAATAGGCCTTCATGCTTTTTTAATTAGGCCTGTTgcacttttttgtgtgttacttAGCAGTGAATTGAAAATGTTATGCTTGTATTATAACACTATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 337443 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 337854 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 338861 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 346197 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 347948 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 10916 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 60220 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 60663 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 176849 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 184177 20565668 ~ 20566142 (+) True G63451
XM_039803158.1 mRNA upstream 36706 20312561 ~ 20327903 (+) True LOC120560539
XM_039802868.1 mRNA upstream 64214 20226320 ~ 20300395 (+) True pcsk5b
XM_039802869.1 mRNA upstream 82570 20226335 ~ 20282039 (+) False pcsk5b
XM_039802870.1 mRNA upstream 82570 20226335 ~ 20282039 (+) False pcsk5b
XM_039804649.1 mRNA upstream 143979 20191919 ~ 20220630 (+) False LOC120561477
XM_039803159.1 mRNA downstream 13352 20394843 ~ 20396117 (+) True LOC120560540
XM_039802690.1 mRNA downstream 16092 20397583 ~ 20400992 (+) True LOC120560324
XM_039803160.1 mRNA downstream 19456 20400947 ~ 20442093 (+) True vps13a
XM_039802891.1 mRNA downstream 92160 20473651 ~ 20490586 (+) False wdr31
XM_039802894.1 mRNA downstream 92160 20473651 ~ 20490586 (+) False wdr31
TU84360 other upstream 915659 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1683448 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1945019 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1948603 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 2033379 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 96321 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 96321 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 294926 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1207385 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2548408 22929899 ~ 22930205 (+) True G63905

Expression Profile