RNA id: XM_039802122.1


Basic Information

Item Value
RNA id XM_039802122.1
length 960
RNA type mRNA
GC content 0.50
exon number 10
gene id mvb12bb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 732697 ~ 773213 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCAGGGTGGCGCGGGGCAAAGTCCGAAGTTGAAAAGGTGACAGCTGGTCACAGCACTCAGGAGATCGACGCTTTAACCAGCTTTGACATGTCTGAAGTGAGCAACCAGCTGCCCACAGAACCCATCTCTGCAGTTGGAGTAATCACTTCACCCAGCAAGGCCCCTGATGGCCACTATGTTGTTGCACAAACAACAGATGGCTGTGATGCCGACCTGTGGAAGGACGGCTTATTCAAATCCAAGGTCACTCGCTACCTCTGTTTCACCAGAAAAACTGGGCCGGACGTTGTTGTGGACGTGAAGCTGATTGACATTAAGGACGCGTTGCCAGAGGGCTTCACACCTGTGGGAGAAACATGGGACACAAAGGAAACTGCCACGAGGAAGAAGAGGCTCTGCATGAAAATCAGCCCTCGTGCGGCTGCTGTGACGGCGGTGTACGACATTCAGATCACAGCGAAGTCCAAGTACCATCTTGTTAACTACACCTGCATAGGTGAGATAAACAGTATGGGGCTATGGTACCGGATGGGAGATGTTTCTCAGCATCAGTCATCCCAGGAAACGTCCAGTACAGCTAACAGTGACGCTCCACCCAACACAGCAAGGGCGAGGACCACGATCAGGCCGGACTATGAGCGCCAGAGCAGTGGGAACTACACCATGACAGCTCTTGACGATGTGCCCTTTGTGATCTCTGACAAGTTTTTTGGAAATCCCAAAGAGATGCAGCAAGTCAATTTAATGGGCATTACGATCAAATCCCTGGCAGAGATCGAGGAGGCAttttactaCAACTTCAGCACAGAGCGAAGCGTTGCTGTGTAACTGTCACCCCGGCAGACCGAGACACTACACATACAAGATGGAATAACGTACTaatgaaaggaagaaaaagttTGGGATGCACCACTGCTGTATATTGTGTaattcaacacacacaaaaagagtaGTTTTAC

Function

GO: NA

KEGG:

id description
K12186 FAM125; ESCRT-I complex subunit MVB12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77979 lncRNA upstream 129517 166018 ~ 603180 (+) True G57999
TU78074 lncRNA upstream 160165 541890 ~ 572532 (+) True G58057
TU78020 lncRNA upstream 473000 257568 ~ 259697 (+) True G58024
TU78015 lncRNA upstream 480625 245891 ~ 252072 (+) True G58021
XR_005639514.1 lncRNA upstream 520314 210756 ~ 212383 (+) False LOC120560799
TU78181 lncRNA downstream 63366 836579 ~ 837861 (+) False lmx1bb
TU78179 lncRNA downstream 106041 879254 ~ 882251 (+) True G58151
TU78184 lncRNA downstream 118884 892097 ~ 892439 (+) True G58156
TU78185 lncRNA downstream 125680 898893 ~ 899506 (+) True G58157
TU78257 lncRNA downstream 279802 1053015 ~ 1053413 (+) True G58209
XM_039804219.1 mRNA upstream 138892 532813 ~ 593805 (+) True pbx3b
XM_039804227.1 mRNA upstream 138892 532813 ~ 593805 (+) False pbx3b
XM_039804221.1 mRNA upstream 138892 532813 ~ 593805 (+) False pbx3b
XM_039804220.1 mRNA upstream 138892 532813 ~ 593805 (+) False pbx3b
XM_039804223.1 mRNA upstream 138892 532813 ~ 593805 (+) False pbx3b
XM_039804573.1 mRNA downstream 16192 789405 ~ 837396 (+) True lmx1bb
XM_039803888.1 mRNA downstream 96818 870031 ~ 877817 (+) True zbtb34
XM_039803459.1 mRNA downstream 256044 1029257 ~ 1052283 (+) False adamts13
XM_039803458.1 mRNA downstream 256045 1029258 ~ 1052283 (+) True adamts13
XM_039802986.1 mRNA downstream 332751 1105964 ~ 1127084 (+) True LOC120560446
TU78000 other upstream 520327 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2105188 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3344066 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 3650928 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 3658958 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 3659455 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile