RNA id: XM_039802128.1


Basic Information

Item Value
RNA id XM_039802128.1
length 3748
RNA type mRNA
GC content 0.45
exon number 17
gene id rasef
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21765626 ~ 21783917 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTTTTCTGTCCGTCCAGCTGGCTAACCGGgacattattttgtattaacacagaggCCGAAGCTTCCACGTTTGATTTATTGAGCGGTTTAATGGTTTAAGGTGGATTACCTTGTTTGGACTATTTGTAAATGCGTGACAGTTGTCAAAATGTTTGGATAAGAGCGAGCAAGTTTGGAAGTTGGGAGGAATACTTTGCGGTTTTCGGGTGTCCCGAGAAACGTTCACAGTACTGAAGTGTTTCTGGATTTGCTCGTCTAGATCCCCTTCATTCACTAAAACGCCTTCTTTTTTCCAGCCAGCCACAGTCCTCCATCAgggctatgagtgcagaggagCAGGACCGGCTGCGCTGCCTCTTTCACGTCTACGACGTTGACAACTCCGGGCGCATCGAGAGAAACGAGTTCCTCACCATCTGTGCGGAACTGCAGGTGTCCGTGGCCGAGGCGGACCGAATATTTAACCGACTGGACGTCGACAACGACGGAACCATCACCCTGCCGGAGTTCATCAGCGGCTTCCGCTACGGAGAGGTCATGGACTCGGACGGAGGAGACGTGTCCTCCGCCTGGGAGAACTTCGAGAGGAGGCTGGGCGAGCAGGCCAAGTTCATCCCTAGGAATGAAGAAGCAGCTACGTTGCACCAGAACATCAGTCTGACTGAGCCCAGACTGATAAATCTGTTTGAGAAAGTCATCACAAACTTCACCAAAGAGATCAAACAGCAGAACTCAGAAATGGAGAACCTGGCCCTCACCATCAAACGAGTGCAGGATCAAGCATCAATGCAGCTCAGTGAAATGGATGATGAGATTGACCAACGCATTCATGCTGCTGAGAGAAAAACACGAGAGCAGgAGAAGCAGCAAACAGAGGCCGCACTGAGTGAATTACGGAGAAGTTATGAAACTGAAATGTGTGAGCTGCAGTGTAAAATCCAGAGGATGCAGATGATAGAAGAGAAGTACAAGAACATCACTGTGAAAGACGCGAGCTCGGCTCTGAAGAAGAAGATTAATGAGCTAACACTGGAGAACCAGCGGTTAAAACAGGAGCTGATGAAGTCTCAGACCGAAGTCGCCTGTCTGCGCAGTGAGATGGACTCGCTAAAGACGGAGCTAACCGATCAAAGCATCAGCTTGGAAAGAGACGAGGAGTTTATAAAACAATTTTCTGATGAGCGAGACGTCCTGGAGAGACAGATCGAGATTCTGCACACAGCCAACAGAAAGCTGCATGACAGCAACGATGGACTGAGATCTGCCTTGGAGAGGACCTCAAGGTCTAGTAACAGTGGATCACCAGGAGAAATAAACAGAAGCAGAAGTAAAAGCATCTGCTACACATCACCCTATGCACTAATGGACAGGTTCGGCCAAAGTATGGATGATTTCCCTCTGTACAGCCGCCAGCCCAGTTGTGACACACTGGCCTTGGCCATGTGTGACCCAGGCCTGAGGCGCAGACACAGCAGCGAGTGCGAGGAGGACAGTCTGCCTGAGATCTACATGGATAGCGGCCTGTCAACACTTAGAGGTTCACACAGAGGCTACGACTCAGAGcaggaggtcaaaggtcaagaagaagaggaagagaaggagaaggagatcaAAGTGGAGGATGACAACAATGATAGTTTGATGGAGAAAAACTCTGACACTGAACCAACAGAGACTCAGGACAGTGAATCAGCATTTGGGTCGGACAGCAGCTCAGTTTTGGACTGGAAGCCATCTGAACCCATTAGTGTGACCAAACCCCCAGCCCCAACTATTCGGAAAGCCCTCAGTGCCATCAGTGTGCAGAAGGAGGACCAGAACAGCACTGACCTGGGCTACATGACATCCGAGAAGGCCTACAGGATCGTGTTGGCTGGCGATGCTGCTGTGGGAAAGTCCAGCTTCCTGCTTCGCCTCTGCAAGAACGAATTCAAATTAAACTCCAGCGCAACACTGGGAGTGGATTTCCAGATGAAGACACTAATCGTAGATGGAGAGCCCGTTTCACTACAACTATGGGACACTGCAGGACAAGAgagGTTCCGCAGCATTGCAAAGTCGTATTTTCGCCGGGCGGACGGTGTGTTGCTGCTGTACGACGTCACCTGTGAGAAGAGCTTTCTTAATGTTCGAGAGTGGGTGGACATGATCGAGGATGTGTCCCAGGAGGATATTCCCATCATGCTCGTCGGTAATAAGTGTGATCTTAGACAAGATGGAGCTAGCTGTGTTCCTACCAGCTATGGAGAGAAACTGGCCATGACATACAACACTCTATTCTGTGAAACTAGTGCCAAAGATGGCTCCAACATCCTGGAGGCTGTGCTGCACCTGGCCAGGCAGGTAACAAAGCAGGCTGCTTTTGATGAGAAAAGTCACTATCAGTCGCTGCCCAACTTAGATGCTCCCAGGAAGAAACCAAACTTATCCTGCTGCACCTGATCAAATTCATCAGAGCTGGACCTCATTACAGGTGGGAAAAGGACTACAAATGCAGAAACCTGCCAAACCACGAAATGAGCTATAATCTCTACGAAACTACTGTAACAGGAACAAATCACCGTTGTAAATAACCAAAACAATTTAACATATGGATTAAGTGAGCAAAAATCGTGGGATGCACAGCAGAATACCCActactctctttttttcaattcaaaGTTATTTGAACATGACTTGAGCTGTATTTCAGCCACACTTTTATTTCATCAATATTTAAGTCAGTGTAAACTTCTTTCCATGTGAAACTTATGTTAATTTTTTATCAAGCTATTACACATATTTAAGTAAGTATGTTTCTTCCACATTTGCACAGTTTGCCCAGGCTGGCACTGCCATGATGTGAATATATTCCAAGCTAATCatggaaagagaaagacagcTGTGAAAGTGAAGTAAAATGTCAGAAGGATTTGAATGTAAAACCAAGTATGTGAGTATGTTTTTAAAGTGACAGTATGTGATGCTGACAAATACCTGCATGTGATAGAGGACAGATGTTAGCATATTGTAATGGTGaggaaataagaaaaataagaaGAGAGTGTTATCTGGTTATGATATTTACTGTGGCACCTATCTAATCGAATCAAACCAGCCTCAATCCACTGTATCAGGTCCTATAAGGAAACACAAGTATGTTGTTTGATGTCAAACTTTGAACTGCAATGATGGCCGACATGGAGACAATAAGAATTATGGGAGAACTTAAAGCAAGAGCTTCATTGTCATTCATAAACAATGAACCCTGGTGCAATGTGTGGTTGTACTGTATGAGACTTCACGTTAATGTCACAACCCACTGTCTATATAATATTACCCTGCAGTGTTACATTCCTTATAATTTGACTTCCCACTGGGGATGACTGTCTGTTATAGAAGTTATATGTTTGGAGCTGAACGTATAGCACATCATGAATGCATTAAATAACTACTGTAATTCTATTTTCTGGTATGAGttatgaaaaaaagagaggtgGCAGGAAGCAGAGTCCTTATTTTTATTCCTCAGATGCATGACTGTAATTCTGTTTAAATATGTAATTTAATCTTAGCAATAGAGTAtgtcttattattatttgttaatAATCATATTATCAACTTACTGAAGGGCAGTGTATAAAGATGTCAATAAACTTTAAATTAAATGCTTGTTGGATTATCAAACAGCCCCTGAAACTCAAGCTCAAGAACCAACGGATATATAAATGTGCATGTGGTAGAACATGTTGCTCAGCTATTTATTT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639467.1 lncRNA upstream 144916 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 147025 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 278589 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 280961 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 418110 21346367 ~ 21347517 (+) True G63576
TU85373 lncRNA downstream 60915 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 91528 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 347967 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1120118 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1203264 22987181 ~ 22988040 (+) True G63914
XM_039803512.1 mRNA upstream 3452 21752655 ~ 21762175 (+) False LOC120560723
XM_039803170.1 mRNA downstream 96213 21880130 ~ 21892139 (+) False LOC120560549
XM_039803171.1 mRNA downstream 96213 21880130 ~ 21892139 (+) False LOC120560549
XM_039803172.1 mRNA downstream 97252 21881169 ~ 21892139 (+) True LOC120560549
XM_039804009.1 mRNA downstream 119295 21903212 ~ 21906827 (+) True tmed7
XM_039803346.1 mRNA downstream 124719 21908636 ~ 21917879 (+) True fem1c
XR_005639510.1 other upstream 166828 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 1087711 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1276789 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1276789 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2316677 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1145982 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 1908745 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3039801 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3039802 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 3901055 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile