RNA id: XM_039802156.1


Basic Information

Item Value
RNA id XM_039802156.1
length 2523
RNA type mRNA
GC content 0.43
exon number 19
gene id si:dkeyp-117b11.1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26597995 ~ 26607634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTAATTACAAAAAACTTTGGAATGAAATGGCCATAACATAAAACCATAgataaaaacaacagaaaactaCCTTCCATGATAAAACTGTAAATACAATGAAAAGCAAACGGCATATAGGATTAAATTACAGTTCATGTCCTCCTTAAAATGTTCTGGTTTTAGCCCACTGTACCAGACTGTACTTCTGTCCCTTGTGGAATTCAGTgatagcatgtgtgtgtatcaaaAGTTAATAATTAATTTCCCCGTTTGATTGCATATATAATACAAAGGAGATGTTATTTACCAGTTGCAGCAAATTATATAAAATTCTGTTATATGGCCATAAACAGTTTGCAGTAGGGAAATGTGAAGCCATGTTTGAGCTGTGCAGTGTTTGCAGCTCGTTTAAAGTCGGGCCGTCCGGCTGCAGGCGAGGCTGTCTGTCTCACACAGGTAGGAAATGCAAATGAGATCAGTTAGAGCTGCTCTTCACATTTTCTCTCTATCGCTCACTTTCAATCTTCAAAACCATTTGCATCCAAAGACCGAAACAAAGACATTTCCCCATGACTTGAGCTGCGAGAGTCGACCCCAAATCATGACAATGagctTCTTTGGAAAACTGAAGAATCTacacAGTGGACCTCCAGCTCCACCCAGAAGGACAGATGACAATGCAGGGTTTGGGTGGCCACAGGATGAGTTTGATGACGATGAAGGTGACATGTATGAAGCGCCTCCCTGTGAGCGTCCGGCTCTGAAAGTCTCTccgagagaagaggaggagaacgTTTATCTCGAGACGACGTCCAATCCTGCTATTCCGCAGAGGCAGGCAGCACCTCCACCCAGATTAGGCAAACCCTCGAAACCTCAACAGCGTGCAGAGGATTTCTTCCATGATCCCAAAACTAAGAAACCACCTGAGATAGACAGAAATGAGAAGCCTGGGAGAAAGAAGATGATACCTCCTCCACCGGTCCGCTCTGCTCCTGCTCCAGGCCCTGCATCCAACACTGAAGAAGATGTGTATCTGGATCCAAATGAAGAACAGGAAGATAATGATGAGCTGTATTTAGAACCTACAGCTGCTTGCCCTCCTGCCGCTCGTGGGCTGATGAGGATGCCTCCATCTGCCAAGACAACATTTGTACCTTCTCCCATACCTTTGATGAAGCCTCCGGTTCCCAGAGCTCAGTCTAATTCATTTTTGCCTTCCTTGAATGAGTTGACCCCGGTTGAAGCAAGACGTGGCACATTTCCTACCAAACTCCCTCCACCAACTCCCAATGTTAAGCCCCGTCTGCCAGCAAACCTGAAGGAAGCCAAACCCAGCCTTCTGAATCCTCCTATGGCAGACACAAAGCCTGTGGCCACCTCTGGTGGTATGAGGGCAACCAAACAATCTGGGAATGAGGACAAAGAATGGTTTGCTGGAGATTGCAACAGAAAGACAGCTGAGGATCTCTTATTGAGGGTCAACAAGGACGGTGCCTTTCTCATCCGTCACAGCTCAGCCCAGAGTGCGCGGCAGCCCTACACCCTCGCTGTGCTCTACCAGCAGAAGGTGTACAACATTCCCATCCGCTTCCTGGGAGAGACACAAGGTTACGCCCTCGGAAAAGAGGGCAAGAAGAACGAAGAGattTTCAGCACCCTCGACGAGATGATCTCTCACCACAAGAATAACCAGCTGCTTCTGATAGACAGCAAAAGCCAGGCCAAGCACACAGCATATTTAACCCACCCTGTACGCCCTTAAAACCACACAACTGGGAGCTTCTCTCATGGTATATCCATATGAGTTACAGGATAATTACAGgataattgcagtttaaaaagttTACTGTAGGTGTATTGTGTGTCCCAGAAGTGTAATTAGAACTATCAGTTCACCCAAAGTACTGTTTTCATGATGTTGTTTATAGATTGAAATAAACAATGCAAACTTTTACTGCACTGAACCATTGGCAGAGATTATGTAAACATCACCAACAGTTGCTCCAAAAGTTACACTCAGGTAAATGACAGCTTTAACTTACTGTAAAGCTCAGAGATCCTAAAGTTATGTCGTTTGACAGAGTGATTTTCCTGTTTTGTCATCGTTTTAGCAACAATTGCACAAGGTTAACTGTTCTCTCgtaaaaaggaaaatgtgtcACTCACTGTATGTTTCCACAATCGGATGAAGAAGGGATGATGTTATTTTCAGTTCGCTGTATTTCACTCACTTTTAAACATACAAACAGTATGTCTCTGCTGTTACGTGATATCAAACCACATCACAAGAGCCTCCCAATTTGCAGCTAAAACCTTCACCTAACTTTGTGCCTCCTGCTCATTTCCATTTTTACTGTATGGTCATGTGTGATGAACCGTTGAGATACATATCTCCatgaatcattttattttagtcaCGAGTACAGATTTGTGTGTttatctttttccaagtttagTTAAGTTTGATGACTTTGATTTTGAATATACTGTCTGTTACAGGtttcttttttgtgttatattgtaGATATTGTGCAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86879 lncRNA upstream 17182 26572244 ~ 26580813 (+) True G64893
TU86818 lncRNA upstream 57359 26540415 ~ 26540636 (+) True G64841
TU86816 lncRNA upstream 57772 26538658 ~ 26540223 (+) True G64840
TU86815 lncRNA upstream 59454 26538268 ~ 26538541 (+) True G64839
TU86813 lncRNA upstream 60300 26535108 ~ 26537695 (+) True G64838
TU86926 lncRNA downstream 55133 26662767 ~ 26663526 (+) True G64930
TU86940 lncRNA downstream 74884 26682518 ~ 26684255 (+) True G64944
TU86951 lncRNA downstream 153757 26761391 ~ 26829185 (+) True G64949
TU86978 lncRNA downstream 286067 26893701 ~ 26896143 (+) True G64967
XR_005639508.1 lncRNA downstream 290268 26897902 ~ 26899558 (+) True LOC120560738
XM_039804082.1 mRNA upstream 682 26585780 ~ 26597313 (+) False plat
XM_039804086.1 mRNA upstream 682 26585780 ~ 26597313 (+) False plat
XM_039804087.1 mRNA upstream 682 26585780 ~ 26597313 (+) False plat
XM_039804083.1 mRNA upstream 682 26585787 ~ 26597313 (+) True plat
XM_039804085.1 mRNA upstream 682 26585787 ~ 26597313 (+) False plat
XM_039803338.1 mRNA downstream 6603 26614237 ~ 26644167 (+) True cltcl1
XM_039803339.1 mRNA downstream 6603 26614237 ~ 26644167 (+) False cltcl1
XM_039803340.1 mRNA downstream 6604 26614238 ~ 26644167 (+) False cltcl1
XM_039803341.1 mRNA downstream 6604 26614238 ~ 26644167 (+) False cltcl1
XM_039804533.1 mRNA downstream 37027 26644661 ~ 26661895 (+) True si:dkey-178e17.1
TU86790 other upstream 101609 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other upstream 101667 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other upstream 101734 26494335 ~ 26496261 (+) False c6h22orf39
TU86770 other upstream 183398 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 682466 25914382 ~ 25915529 (+) False LOC120560031
XR_005639500.1 other downstream 6603 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 37386 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 597600 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2742490 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3579214 30186848 ~ 30212108 (+) False fbxo21

Expression Profile