RNA id: XM_039802188.1


Basic Information

Item Value
RNA id XM_039802188.1
length 3090
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120560080
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29496780 ~ 29503951 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGAGGTTTCCCCTTCAGTGCCACCTTGTACGTTAACGGCATCATGGTAGCCAGAATCAGTTCGTGCTGCGAGTACCGCTACGCTCCAGGCTTCCAGCAGGGCAGGAAGAGCTGCTTCAGATTGGCTTGGCTGGCAGGTGGCCTACCCTGTTACAGATGCACAAGTCTCCGAAACAAATACAGCTCCTGCCAACAGCTGAACAACGGCACAAAGGACAACTTAATTCTCCCTCTAGACAAGAGCCCTGGCAATGGCACCATCGAGTCGTGTCCATCATCCCCTCTCTTTATCCCAGCCAAACCCGAGAGGAAATCAGGGAGGAGAACAAGAAAACATATCAAGGAAGGCAGTAGGGGATCTACAGACAGCGAAGACCCTGCTGTAGCTGGGATTAAAGAGACTTCCAAGAAGAAACAACGCAAGGGTCAAACTAAACAGAAAGAGAGCAAAGGCAAAACAGCTGGAAATAAGAGGGAAGAGGGACAAGACAGCAAGGGCTTGGAGGGCACGCACAGGTCAACAGCGACTGAAAAATGTGAAGACCAAGCATCGTCTGACAGACGAGAACATAAGCAGCAGAAACCAACCAGCAATGTCACAGAGCTGCAGAAAGAGCAGCCGCGACCAAACGTGACAAGCAAAGTTCTCGattcaTTGCAGGATGAGGAAGCACTGACTAAGCagaacagagagaaacagaaggaGCTGGGATCAAATGGGAAAAGCAGAGATGGGGAAAGACTGAAGGACTTCTATGAAGAATGTGTGGAAATGAGCACGGCGTTGGAGCAGGGCCTAAACAAACACAACTGGTTCAAGGCAAACATCCTGGAGAGATGCCGGCTCCAGAAGAGGCTGTCATCGTGCCCCAAATCTCCAGGCTCGGATGTGGAGCCCAGTGCAGAAAGTGATACAGTCCCGCAGCCTGATGGAGAgccagaggaagaagaggacacTGCCAGCCAGAGTGCTGGCAAAGAAGAGCCTGTTAAAGAACAAGACCTGCAGgcgcagCTCCACGCCATGATGACGGTGCTGAGCACATCCGATGAGGTGGAGCAGCTGGTTCTGAGGAACACGGACCTGACAGACGACCTTCTGCTGAGCCTGGCGGAGGCCTTGAAGAGCAGCCTGTCCAAGGTCACACTGCTCAACCTCAACCTCAACCTCATTGGCCCGTATGGAGCCCACATCCTGCTGGACGTTCTGAGAGTGAAGCCTCAGATCAGAGGCTTACACTTGTTTGGAAACAAACTGCGTGACCATGGACTGCTGACCCTGTTGAATGGAATAGCTGAGCTGCAGGAGCAAACAGCAAGAGCTGCTGCTGCCATCCAACAGGCCATGCTTTTCCCATCGGAGCAGAATATGCTTCTGCAGCTCCCCACTGGGTGGAGctctttcagtgtttttgcGCTTTTGGAACTAGATATTGGGGGAAATGGCTTGAGCAGCGAAGGGGTGAAGGTGTTAGCATCATACATGAGGCACCACTCTTATCTTCAGTACTTGGGGCTGGCGCAGAATAGCGGCGCCGATCTGGCGGCGTGGAAGGAACTTTTCGACAGCCTCAAAAGAAACAGCTCGCTGACTCAGGTCATCCTAGACGAGAACAACTTGGGAGACCCTGGGGTCAGGCTGCTGGCTGACATGCTGAAAGAGAACGTGAGTCTGCGGCAGGTGGATCTGGACAGGAACGGCATCAGCGACGTGGGAGGAAACGACATCATGGGCGCGTTGCTTTGCAGAACGCAGGTACCGTTGACGCATCTGAGCCTACAGGAGAACAACATCAGTGCAGGACTTATGAGTAGGATACAGGAAGAGGTCAAATATCAATGCATCCTGTAGGAGTGGAAGAATACAAATAATGAGAATCTAtgtaacacatacacaaagcacTGACTTTGAGAACTCATAATATTCCTTGTTTACATTTTGAGGTCAGagactttgtttttggttttttaccattaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatctctcttCCTTCCTGTGAGTGGGTGGCCCTGCTAACAAATGCTGCATCTTAGTTTAGCCCAGGCAGGTAGTGTAGGAGGTATGTTTGCTTTAGGACTGCACTGTGGTCTGGATGGATTTTCAAAGAGATCTCAATGAACTGaacctttctttcttctttgtgGTGAGGTTTCATCTTAACCTTGAGGTTTTCTTCTTCCCACCAGCATTACCACTCCTGACTCCACACCTCCTACTTTGCTAAAACTGATTCCAGTGTCATCTTATTGAATAATTTGCAGCCTCCTGACTAAAAAGAAACCAAAGTGATTCATTCCACCCACAGTATTTACAGGTCATGGATGACTTACCCACAACTTCCCCCCCCAGAACATTTTAGTAGCCACCTTGAGATCCCTCTCCTCTACTCTTACATACAAAAGATACTTAAGACATCTAAGCCATGCCACGTCAACTACCCTTATTCTGCCACGTCAACTAACCTTATTCTGTCATTCTTGTCTCTCTTCGTGTGCTAGACAAAGCATCTATTCAGACTCTAAGCGCTGTGTGTGAACTTCGAGGCCGTCATCTCATTGTTCTATCAACACAGACATTCTGAGAATGACTGTACCTGTGATCAAAGCTTGTCAAAGTGGTAATTATCTCCTCCTGTCAGGGCTGCCGGTAGTGACTCTGCTGAAACCAATCCCTCCATATTTCATCTGCAGTCTTTGCGAATTTCTGTCTGTGGAACCCCGATAAAGACGCTCTCCGAAACCCCCGGGAGGATGACAGATAAATGAGACTGGTGCACCTGAAGATTACATCTGCAGAAGTTGTCTTGTTCCACTGTATCAGACTGAATAAGCTTCTGTTGTGGCCTACATTCAAAACTCTGTACAGCAAAGAAAGGATGTCTAGTGTGGGGTTGTCTTATTTTGTCCAGATCGATTCTGTGTGTCTAAATGAGATTGGTAAGATTTAGTTATcagcaataaaaaaagagtcCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639509.1 lncRNA upstream 365564 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 391171 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 398467 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 494600 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 649533 28845626 ~ 28847247 (+) True mboat4
TU87928 lncRNA downstream 43498 29547449 ~ 29614880 (+) True G65710
TU87931 lncRNA downstream 85056 29589007 ~ 29591364 (+) True G65713
TU87952 lncRNA downstream 267688 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 308021 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 431942 29935893 ~ 29936995 (+) True G65745
XM_039804028.1 mRNA upstream 1638 29493252 ~ 29495142 (+) True LOC120561062
XM_039803049.1 mRNA upstream 105996 29382376 ~ 29390784 (+) False LOC120560482
XM_039802101.1 mRNA downstream 10075 29514026 ~ 29583569 (+) False col27a1b
XM_039802100.1 mRNA downstream 10076 29514027 ~ 29583569 (+) True col27a1b
XM_039802108.1 mRNA downstream 103287 29607238 ~ 29620658 (+) True hscb
XM_039803741.1 mRNA downstream 533601 30037552 ~ 30058804 (+) True scarf2
XM_039803743.1 mRNA downstream 565460 30069411 ~ 30071555 (+) True selenoe
TU87830 other upstream 145027 29350124 ~ 29351753 (+) False ubac1
TU87117 other upstream 2195010 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2838811 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2854299 26614237 ~ 26642481 (+) False cltcl1
TU86793 other upstream 3000519 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639517.1 other downstream 682897 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 742936 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 743988 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 744032 30247983 ~ 30251519 (+) True LOC120560820
TU88162 other downstream 1070135 30574086 ~ 30578159 (+) True G65899

Expression Profile