RNA id: XM_039802204.1


Basic Information

Item Value
RNA id XM_039802204.1
length 2030
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC120560092
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25757088 ~ 25762906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTCCAGACTCCCGCTCTGATTGGCTCTTATTTGAGGAAGCTCACGGGTTCTTTCAACTAATAAGCGCCTCCCCATCGCTCTAAAGGACATTATAATGCAAGGGACCTCCTTTTTTTAACCACAAACCGAATTTTCGTTCATTTAGACGATATATACTTTTTAAATTGCCCCAAAGTTGTGGGATTTTTTGGAGCGCATTTCACCCTGGAGCGGTACGCCATGCTCTCTCACGCCGACCTCCTGGATGCTCGGCTCGGGATGAAGGATGCTGCAGAGTTACTCGGACACCGAGAGGCTCTCAAGTGCCGGCTGGGTGGTGGGGTGCCAGACCAGGGGCATCCAGGAGACATGGCCCCTGGTTCTGACTCTGTAGAGGGAACCACTCTCCTGCCCGGAGAAGACATCGCCACTGTGGGATCCAACTCTGCCGGCATGCCGGTGAACGGGAAGGAGCaggagaagcagcagcagcaacaaccgCAGCAGAGCTCCAGTCAGTCCTCCAGCCAACAGAAACAGAAGCGGCACAGGACGCGCTTTACCCCGGCGCAGCTCAATGAGCTGGAGCGCAGTTTCGCCAAAACCCACTACCCCGACATCTTCATGAGGGAGGAACTGGCGCTGAGGATCGGCCTCACCGAGTCTAGAGTCCAGGTTTGGTTTCAGAACAGACGCGCTAAGtggaagaaaaggaagaagacCACCAATGTTTTCCGCTCCCCGGGGACGCTGCTCCCAACACCGGGCCTGCCACAGTTCTCTGCCGCGGCCGCCATGGAGAACAGCCTGTGCTCCTTCCACGCCAACGACTCTCGCTGGGCCACAGGGATGCCGGGGGTCTCCCAGCTGCAGCTCCCGTCGGCCCTGGGTCGCCAGCCGGGCATGCCACAGTCCCTGTCACAGTGCAGTCTGGGCCCCGGCCCACCACCAAACTCCATGGGTCTCTCCAACGGCCTTTCCTCCAACGGCTCCGGTCTGCAGTCCCACCTCTACCAGTCGCATTTCCCCGGAATGTCGGCCTCTCTATCCGGCCCCACGAACGTATCGGGCTCCCCGCAGCTGTGTAGTTCCCCGGACAGTGACATGTGGAGAGGGACAAGCATCGCGTCACTGCGGCGCAAAGCGCTGGAGCACACAGTGTCCATGAGTTTCACTTAGTGACTTTTCAAAAACACCCCCACCGCACTACTCTGCTCCTAACTCCCTCTCCCAGCCCCACCCTTCgactctttttctgtttttattcccGCTATTAGATCAAAACGAGAGAACGAGCGAGCTAATCAGGCCAGAAATGTGAGGAAATGGAGACTGTATGTGACTTCATCTAGACATAGCCtaatgacaaaaagaaaaggacAACACTGATGGACAAAcggaagaaaaaaatatcttGGGTTTGGGGTTATTTATCTTGTTACTTCTAAAGGATTTTATCAACTATTGATGATAAATACTATTGTAATGATCTCTAGACTATAGGCCCTAATTATTAAGAGCCAAACAATCGTCGTATTTACGTTTTCATTGAGTGTGTCTTCACGCACACATGTTATTGTGTTCAGGTGAAGTTGTTATGTCAAACGGTTATTTATAAGATGGGGTATACATTTTTGGTAACAGCCTACCACCAACACGCACCATACTGTAGGTGGGCCTATTGAACTGGCTTTCGGGCATGCACTGTGCATGTGGATTTAAACGCTTGGATAATTTAAGGAGAAAATGGTGCCCACTCAGATTGAAGAGTCGACATCAGTCTCGTATCTATGAGATGAGAGCATTAATctaaagaggagaaaaaacaaTGATCTTTCAGTAGGCCTACGCTGTTTTAGGATGTTTTGTGTAGATAAAACATTCTTGCTATGTACCCGCTGGTCTTTTTTGTGACATGTTTTAACTTATTGTATGTGCTATTACTTGACACATTTCTTAAATGTTTGATCTTACATCGAAATGCACCACATTGACGGGTTTGTACcaatttaaaatgaacaaacaaataaaagtaattttCAAGAATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639536.1 lncRNA upstream 9199 25713910 ~ 25747889 (+) True LOC120560927
TU86493 lncRNA upstream 57304 25697063 ~ 25699784 (+) True G64592
TU86472 lncRNA upstream 93703 25663027 ~ 25663385 (+) True G64578
TU86363 lncRNA upstream 201307 25552939 ~ 25555781 (+) True G64495
TU86357 lncRNA upstream 205591 25548151 ~ 25551497 (+) False LOC120560635
TU86515 lncRNA downstream 25551 25788457 ~ 25795441 (+) True G64607
XR_005639405.1 lncRNA downstream 76230 25839136 ~ 25843093 (+) True LOC120560032
TU86551 lncRNA downstream 153038 25915944 ~ 25916892 (+) True G64643
TU86566 lncRNA downstream 154281 25917187 ~ 25917476 (+) True G64657
TU86567 lncRNA downstream 154859 25917765 ~ 25918093 (+) True G64658
XM_039804178.1 mRNA upstream 60512 25684964 ~ 25696576 (+) True LOC120561182
XM_039803612.1 mRNA upstream 97627 25655685 ~ 25659461 (+) True LOC120560772
XM_039803611.1 mRNA upstream 103932 25647115 ~ 25653156 (+) True LOC120560771
XM_039804390.1 mRNA upstream 110611 25626005 ~ 25646477 (+) False spef2
XM_039802030.1 mRNA downstream 11472 25774378 ~ 25784037 (+) True LOC120559963
XM_039802136.1 mRNA downstream 151373 25914279 ~ 25915577 (+) True LOC120560031
XM_039802758.1 mRNA downstream 163194 25926100 ~ 25928596 (+) True LOC120560359
XM_039802766.1 mRNA downstream 176870 25939776 ~ 25949337 (+) False LOC120560362
XM_039802763.1 mRNA downstream 176958 25939864 ~ 25949337 (+) False LOC120560362
TU86491 other upstream 60518 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 922457 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 922468 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2063797 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2826883 22929899 ~ 22930205 (+) True G63905
TU86550 other downstream 151476 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 649963 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 731429 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 731429 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 731429 26494335 ~ 26496261 (+) False c6h22orf39

Expression Profile