RNA id: XM_039802270.1


Basic Information

Item Value
RNA id XM_039802270.1
length 2378
RNA type mRNA
GC content 0.45
exon number 5
gene id si:dkey-178e17.3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26666733 ~ 26679998 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCGGTGTCCAACATACGAATAGAGGAGAGCTGCTGTGCACACAGGCTCCACTTTTATGCATCAGTTGTTCGTGTTAAGGTGTCAATGCCGAACTTACCTTGGATTTGCATTTTATATGAAAAAACACCACCATTGTCTTTATAACAAAACTCAGTTTTAGGCATCATCCAGAGTGAAGAAGCATACACCAGCGCAGTGTGCGTGTAAGTGTGGACCCAGAAAAGTCTCCGTCATGGGAGCGCATAGATGGAGCTCAGCGCGTCTTGGGTTTGTCGTTTGTGGATATTTCGCGTTTTTCTGCGGGGAAATTGTTTCACGGGCTGAAGCGGgctgcagggagagagagagcccaAACTGCTGCAGCGGCCGGAACAACGAATGTTTTGAGTACAGCAAGAGAAAAACAGTGTGCTACTGTGACACCTACTGTCAGAAAACCGGAGACTGCTGCGAGGACTACCAGCGTGTGTGTCAAATATCTGCAGCCATTGACTGTGTGGTGGGATCATGGGGTCCCTGGTCATCATGCACATCTCCATGTGGAGTTGGCAGCACAGAGAGGAGTCGCCAAGTGTCTATTCCCCCTAGAAATGGCGGCACGCCCTGTCCTGACCTCAAACAGCGCCGGGGATGCTTTGGAAACAACGCCATATGCAGCACTGCGAAAGAGGTGGCAAAGATCCTGCCTGATTCTTTCAAGAGGAACTTCAAGGACCCTTGGAGGCGACCACACATGCTGATGAAGGAGGAGAAGGCCAGTTACTGTGTCTATTTGCGGGTGAAACAGGCCAGTGCAGCATGTAAACTTAAACTGTGGAGTGCTCAGCTGGTGAAAGAGAGGCTGGTCTGTGCAGAGTGTCAGAGTGATGCCATGTCAAAGTCAGACCGCTGTGGAGGAGACGGCCTAGAAAGCATCAGAACGTTCTGGGCAGCAGCTTCAGTCCCGGGCTGTCATGGTTCCTGGGTGAAAGAGTCGTCCTCCTTGGGCTGCCGCTGTCCTGCCTACTCTGTGCTCTTCGTGTGAGCTGACACGCAAACCCAAGACATCCGTATGCAGGGACAAGATTTCCCTCAGCACCTCCTGCTAACTGTGGAGAGCCCTGCCAGCCAAGCCAGACCCCTGTGATCCAGACTACTGGATGGGTAACTCAAGGAGATCAGCAGCATCCTGCCACTTTTTCCTATCACCTCATACTCTGTACTGTATACACTATTAATAAGCACACAGAAATTCTCGCATTTAACTTCAAATCTTACAGCCACGTTATGTACTTATTCTCCCCCAAAGCACAGCAACATCTATATGCCTTTTTACCTCCGAATCTTTGCTATCTACCTCCATCAATGCAAGTGCATTTGTTAATGcataatgtataaatatataaatatattattttgctTTATACATTTTCTACTTTTGATTGTTTATATGTTATGTATATGTGTCTATATAGCTACACTTATGTGTATTCAACAAATGCCAAACAGCAGTTGCTGCACCCAGTGTAAGCCCTAGCCAGGGTCCCTAAATCACCTGCAGGTTGGAGAAGCTGAAAACTGGTTCATCCAAATTGTATTCATTGCTAGAATCCTTGAGTCAATATATCTGTGTTTTACAGTTTTGTCCCTGCTATTATTTcttttcaacaaaaacatttataccAGCAAGTCAAGTTGAATATCAGGTATTGATTCTCAGGTGCTGAgatttgtgtctttgtctcccATCAAGCTTCCTCTTTCATGTCTACCACCTCTGATGGTCAGTGACTGATGTTTTTAGGAGTTTAGAGTGACTCATAGATGAAATCAGTCCCATCTGTTTAGACCTAATATTGTTGGAGAGGAaaaagagccattaaaaagtatTGTACTGTggttctctctgtcctctgtgtccAAGACTGAAAACAGTTGCTTCATAACAATGTTTTCTCTTACTCCCTGCCCTGCTCAGAAATCCTATTACCGTCACAAGGGAGTTTTTATTAGCAAAGTGTCATCTAATATATCTATCGCATACAGCCATGTTACTCCCATTTTATTCATTAACAGACTCTCCTCCCAGCACTCCCCACATATCCTTGATCtgcacttctttttttctctgcccTCTACTGACTTGGTGTATTCTTAAAAACCAGGAGTCAGTTAACTGGCTCAGTACGCCTTCCTGTATCTCTTGTACTTCTGCTTTAAGAAGACAAGTGTATTCCCAGTAAAGGGCTTTTCTCTCTGGAAAGCTGTGACTTTCTCTCTcccatgtctgtgtctgtgtgtttatttattataaaacaaATGATGATGTTATTAGTGCAGCACAGCATACTCTGTACACTGTCCATTAGTGAAAATAAACAACTATACTGACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86926 lncRNA upstream 3207 26662767 ~ 26663526 (+) True G64930
TU86879 lncRNA upstream 85920 26572244 ~ 26580813 (+) True G64893
TU86818 lncRNA upstream 126097 26540415 ~ 26540636 (+) True G64841
TU86816 lncRNA upstream 126510 26538658 ~ 26540223 (+) True G64840
TU86815 lncRNA upstream 128192 26538268 ~ 26538541 (+) True G64839
TU86940 lncRNA downstream 2520 26682518 ~ 26684255 (+) True G64944
TU86951 lncRNA downstream 81393 26761391 ~ 26829185 (+) True G64949
TU86978 lncRNA downstream 213703 26893701 ~ 26896143 (+) True G64967
XR_005639508.1 lncRNA downstream 217904 26897902 ~ 26899558 (+) True LOC120560738
TU87101 lncRNA downstream 357055 27037053 ~ 27039599 (+) True ndufs4
XM_039804533.1 mRNA upstream 4838 26644661 ~ 26661895 (+) True si:dkey-178e17.1
XM_039803338.1 mRNA upstream 22566 26614237 ~ 26644167 (+) True cltcl1
XM_039803339.1 mRNA upstream 22566 26614237 ~ 26644167 (+) False cltcl1
XM_039803340.1 mRNA upstream 22566 26614238 ~ 26644167 (+) False cltcl1
XM_039803341.1 mRNA upstream 22566 26614238 ~ 26644167 (+) False cltcl1
XM_039802267.1 mRNA downstream 7334 26687332 ~ 26719116 (+) True pi4kab
XM_039802266.1 mRNA downstream 7400 26687398 ~ 26719116 (+) False pi4kab
XM_039802265.1 mRNA downstream 7400 26687398 ~ 26719116 (+) False pi4kab
XM_039804018.1 mRNA downstream 110200 26790198 ~ 26791064 (+) True LOC120561052
XM_039804019.1 mRNA downstream 113693 26793691 ~ 26794572 (+) True LOC120561053
TU86927 other upstream 8764 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 24252 26614237 ~ 26642481 (+) False cltcl1
TU86790 other upstream 170347 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other upstream 170405 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other upstream 170472 26494335 ~ 26496261 (+) False c6h22orf39
TU87117 other downstream 525236 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2670126 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3506850 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 3566889 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 3567941 30247939 ~ 30250268 (+) False LOC120560820

Expression Profile