RNA id: XM_039802290.1


Basic Information

Item Value
RNA id XM_039802290.1
length 2146
RNA type mRNA
GC content 0.54
exon number 15
gene id ewsr1b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19364006 ~ 19372609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttttctgcGAACAGAAAAACGTTTCTCCAGCAGCCAACCTTCTCCAGTCGTCTTGTACAGGCACACTAAAATGGCGTCAGCTCCGGCAGATTACAGCTCCTACAGTCAGACCACTGCTCAGCAGGGGTATGCCTCTTATGCTGCCCAGCCCTCACAAAGCTATGGACAGTCTGCAGCACAGcagAGCTATGGTCAACAGAATTATGGATCATATGCccaacctgctgctgctgacggCACTTACACCCAGACAACACCTGCCGCCGCAGGCTACactcagcagcagcaacaacagtatGGGTCCTCGTACACCCAGCCAGCAGCAGCTGGCTATCCTGCTGCCCAGTCGACCACTCATGCCTACTCCCAGTCAACCCAGGGTTATGGAGCCAGTGGTTATGACAGtactcctgctgctgctgctccagctGCCTCCCAGTCTTACGGCTCTCAGCCAGGGTATACTGCCCAGTCTGCCTACCCTGGTTATGGCCAGCAGGCTGCTCCCACTGCACCGCAGAGTTACAATGCTAGCAGCCAGCCAGCCACTTACAACCAAAGTAGTTACTCCCAGCCAGCAGCATATGGCCAGCAACAGTCAGGCTACCAGGCTGCGCAGGCAAGCTACGGTCAGCAGGGCTACCAGCAACAGTCCCAGCAGCAGTCCCAGGCTCCTCCTGCTTACCCTCCTCAGGCTTCTGGTTCCTATGGGCAGCCTCCAGCCAATCAGTACAGTCAACAGGGTGGACCTCCCAGTTACAACCAGTCCAACCATTACAATAATTACAGACAGGATGGCCAGGGTGGAGGTTCTGGTTACTCTGGCTCTGAGTCTTCAAGGTACTCTGGGTCAGGGGAGAACAGAGGCAGGGACGGCTTTGATCGAGGTGGAATGATGCATCGTGGCCGTGGAGGCATGGGCCGTGGCATGGGCAGCGCTGGAGACAGAGGTGGCTTCAGTAAGCCTGGTGGACCTATGAACAGCGACGAGCGTGAAACTGGACGCCCTGAAGAGCAGGATGACTCTGAGAACAGCACAATCTACATCACAGGATTGACTGAGAAGGCTAACCTGGAGGAGATGGCTGAATTCTTTAAACACGTTGGCCCGATTAGGATTAACCGCAGACTTGGCCAGCCTGCCATtaacatatacacagacaagGACTCAGGAAAGCCCAAGGGAGATGCCACCCTATCCTATGAGGAGCCCGTCTGTGCCAAAGCAGCTGTAGAGCATTTTGATGgAAAGGAGTTCCAAGGCCGAAGGCTTAAGGTGTCCATGGCACGCCGTAAGCCCATGATGGGTGGAATGAGGGGTGGCATGCCCATGCGAGATGGCATGATGGGCCGTGGAGGTATGATGGGCCGTGGAGGTGACCGTGGCGGGTTCATGCCACGTGGTGGTCCTCGTGGTATGGGCAGAGGTGGACCCACAGGAGGCAACATGCAGCAGAGAGCTGGGGACTGGGAGTGTCCTAACCCGGGTTGTGGTAACCAGAACTTTGCCTGGAGGATGGAGTGTAACCAGTGCAAAGCCCCCAAGCCAGAAGGGTTGGGCGGTGGCCCTCCCTTCCCCCCTGGAGGTGACAGAGGCAGAGGGGGAATGGGAATGCGTGGAGGCAGAGGCATGGACCGTGGTGGGCCCGCAGGAGCTGGAGGCCCTGGTGGTCCCGGAGGTTTCCGTGGAGGTTGGGGAGGCGACCGTGGTGGATTCAGAGGACGTGGTGGAATGGACAGGGGAGGTTTCCGAGGGGCCGGGCGTGGAGGACCACCTATGGACCGAATGGGTGGCAGAGGTGGAAGAGGAATGGGCCCTCCAGGTGGCAAGATGGATATGAGggacCATCGTCAGGAGCGCAGGGAGCGACCCTACTGATGGAGAACTTCTTGATTGTTCCTCTTGTGgaatttgatttttaaaataaaaaattttaatttatgATTCCATATTTCGGTGGTTATAGAACTGCTTTCAAACATCCTGTGCAGTTTCATTGAactcatttccatttttttttagtttaccCATGTTTATGCCACATCTTGTATTGTgcacgttttgttttttttaaatatgctgaTTAGGTTTGACATTGTGTTGTaaaatgctttttctttttttttttttcctcatttgttTA

Function

GO:

id name namespace
GO:0021954 central nervous system neuron development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13209 EWSR1; RNA-binding protein EWS

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639511.1 lncRNA upstream 210423 19151533 ~ 19153584 (+) True LOC120560789
TU84161 lncRNA upstream 277145 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 277145 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 282353 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 381384 18966083 ~ 18982623 (+) True G62796
TU84387 lncRNA downstream 176801 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 182774 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 182774 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 202952 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 202952 19575561 ~ 19633642 (+) True G63015
XM_039802286.1 mRNA upstream 6861 19298555 ~ 19357146 (+) False emid1
XM_039802285.1 mRNA upstream 6861 19298556 ~ 19357146 (+) True emid1
XM_039802287.1 mRNA upstream 6861 19298556 ~ 19357146 (+) False emid1
XM_039803343.1 mRNA upstream 67333 19269536 ~ 19296674 (+) True dnah10
XM_039803344.1 mRNA upstream 94979 19256786 ~ 19269028 (+) True atp6v0a2b
XM_039803802.1 mRNA downstream 3585 19376194 ~ 19399253 (+) True gas2l1
XM_039803144.1 mRNA downstream 27274 19399883 ~ 19427717 (+) False ap1b1
XM_039803142.1 mRNA downstream 27560 19400169 ~ 19427717 (+) True ap1b1
XM_039803143.1 mRNA downstream 27560 19400169 ~ 19427717 (+) False ap1b1
XM_039803145.1 mRNA downstream 27560 19400169 ~ 19427717 (+) False ap1b1
XR_005639481.1 other upstream 682846 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 944417 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 948001 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1032777 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1354689 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 62298 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1105203 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1105203 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1303808 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2216267 21588876 ~ 21598799 (+) False LOC120560787