RNA id: XM_039802306.1


Basic Information

Item Value
RNA id XM_039802306.1
length 5817
RNA type mRNA
GC content 0.44
exon number 27
gene id ube3b
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18720734 ~ 18729940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCCCCACCACCGACCTAACACACTGGACGAAAGCATTATCCACCAGCAGAAATacaaagttgttgttgttacaaaaCGAACAAAGATAGGTTGGCATATAGCTAGACATTCTATCGACAAATACTCTCCCGATTTATACATCTCTAGACAAACGCTACCCGGACGCATTTAGTGCGGCACAGGGATTAATGGCTGCAGTCGATGTACGGATCTGCTCTCATTGTTTACATTTCTAAACGGTATGTCACCCGTGTTTTTTAGGCTGTCATTGATACGGGATCAAACCTAACCCCGCAATGATGATAAATAACGCTAAATGAATGTGAAGAGATTCTCTGTAAGACAGTATCAAGTGGAGCAGCGGCGAACTAGCCTTGTCTGCTAACTATCCCAGCTCCATCTTTCCTGTGTCGCCCGCTGCTCCAGAGATGGCAAGTTAGTCTTcatctttgtttggttttcCGCCCGCTCGGATCTCAAGGACAACCAAATGACTGAGGGGGTATAGCGCCAGGGGCGCCTATAGGCCAGGCAAAATCTTAATTTGAGGAATATTGCAGGTGCACAATGTTTAGTGTACCTCAAAGCGCCAAGTCCGAGTTCCTGGACAAAGCCAGGCAGGCcagggaggaaaggagaggacaTAAGGACAAGGAAAAATCAGCAATCCACATCCAAGCCCTGGTCAGGAGATTTCTCTGTCGCTGCAGACTCCAGAAGCAAATACGGAAAGAGGTTGATGACTATTTTCAAGCTTCTGAAACTGGGACATCAAAAAGAAATGCACTTTCAATTTTCAAAATTGCTCGGAAATTACTATTCGTATATTGCCAAGAGGATAAGATGAGGTTCGAGAAGCTCTGTCGTGCAATCCTTGCCAGCATGGAGGTTGAAAATGAACCGAAAGTCTGGTATGTTTCCTTGGCTCTCTCCAAAGACCTCACCATTCCTTGGCTCAAACAGATAAAAGATGTACTGTGGACCTGCTGTCAACTACTGAAAAATTTAAAGCCTGACATACTTCAGGACAATAAATTGGTAACGCTGTACCTCACCATGCTGGTGACCTTCACAGACACTTCAACCTGGCGGATAGTCCGAGGGAAGGGAGAAGCTCTAAGACCCGCTTTGACGAGGATTTGTGAAAATATTATGGGCCATCTCAATCAAAAGGGATTCTATTCAATACTCCAGATCTTGCTGACCAATGGCTTGGCTCGTACTAAACCATCTCTCTCCAAAGGCACTCTAACAGCTATCTTCTCTTTGTCATTAAGGCCAGTCATTGCTGCTCACTTTTCTGATAACCTGCTAAGATCATTCCTCCTTCACATCATGTCAGTTCCAGCCATTGTATCTCACCTCAATGTGCTTACTCCAGAGTGTATGGCGTCCATCCAGACGCATGACCTGCTGCGGAAGTTCATTCTGTTTCTCAGCCGGGAAGAACAGTGTTTggacatctgtgtgtgtcttgaggGGAGCCACACACTCTGCTTACTTGGCAATCTGATTCATTTGGGCTTCCTTAATGAGAAAGTCCTTGAAGAGGAGGCCAATCATTTTGTGAAGGACCTGACTGACATGCTGTCCTACTGCCAGAGATATGTATCCCAAAAGAAGTCCAACCTTACCCACTGGCACCCTGTCCTGGGCTGGTTCTCTCAGACTGTAGACTACGGTCTGAATGAGTCGATGCCGCTGGTCACTAAACAGCTCCAGTACCTGTGGGGTGTTTCTGTCATTCGGACGCTCTTCAGCGACGTCCTCTCTAAAAAGCTGGAGAGTCAGGAGCCCACTCCCCCACCCCCGCAGCCTAGCACATCACAAAACAATCTACCAGTTAAAAACCTCTTCAAGCGAGCGTTTCAGAAGTCGGCTTCTGTACGGAACATCCTGAAACCAGTTGGAGGGAAGCGAGTCGACTCAGCTGAAGTTCAGAAGGTGTGCAGCATCTGTGTGCTCTACCAGACTGCTCTGTCTACATTAACGCAAATACGACTCCAGATACTCACCGGTCTGACACATCTCGATGAACTTTTGCCCAAACTTTGGGCCTTCATCTGTGAGCTGGGTCCTCAGGGAGGCCTCAAACTCTTCATGGAGTGTCTGAACAATGACACTGAAGAGTCCAAGCAGCTCCTGGCTATGCTCATGCTCTTCTGTGACTGCTCACGGCACCTCATCACaATTCTGGATGACATTGAAGTCTATGAAGAACAAACATCTTTCAAGATCGAGGAACTCCTCACAATCTCTTCATTTCTGAACACATTTGTGTACAAGATGATATGGGATGGCATCTTAGAAAACGCTAAAGGAGAGAAACTGGAGTTGTTTCACAGTGTTCATGGCTGGTTGATGGTGCTTTATGAGCGGGACTGCAGGCGACGATTCACCCCTGATGATCACTGGCTACGCAAGGACCTGAAGCCCAGCCTGTTGTTCCAAGAGCTGGAGAAAGGCAAGAGAAGAGCCCAGCTTTTACTACAGTACATCCCGCATGTCATTCCACATAAAAACAGGGTGCTGCTGTTCAGGAACATCGTtacaaaggaaaaagaaagtTTAGGATTGGTAGAAACCAGCTCTGCTTCACCACATGTCACCCATATTACCATTCGTCGCTCACGGATGTTAGAGGATGGATATGACCAGCTCCGCAGATTACCAGCAAATTCCATAAAAGGCGTTATTCGTGTAAAGTTTGTCAACGACCTGGGAGTAGACGAGGCTGGTATCGATCAGGATGGTGTGTTCAAAGAGTTTCTGGAGGAGATCATTAAGAAAGTGTTCAATCCTGCTCTCAACCTGTTCAGGACTACGAGTGGAAATGAAAGGTTGTATCCTTCACCCACATCTTACATCCATGAGAATCATTTGCAGCTGTTTGAGTTTGTGGGGAAGATGCTTGGGAAAGCCATATATGAGGGCATTGTTGTGGACGTCCCTtttgcctccttcttcctcAGTCAAGTCTTGGGTCACCACCACAGCACTTTCTACAGCTCCATCGACGAGCTGCCCTCGCTGGACTCTGAGTTTTACAAGAACCTCACTTCCATTAAGCGCTATGATGGAGATGTAGGGGATCTAGGACTGACATTATCCTATGATGAGGATGTTATGGGGCAGCTTGTGTGTCATGAGTTGATACCTGGGGGGAAAACCATGCCAGTCATCAACGAAAACAAGATCAGCTACATTCACCTCATGGCTCACTTCCGGATGCACACACAGATTAAGGAGCAAACGGGCGCTTTCATTCGAGGCTTCCGCAGCATCATTAACCCAGAGTGGCTGCACATGTTTTCCACGCCCGAGGTTCAGCGCCTTGTCTCGGGAGACAATGCCGAGATTGATCTGGATGACCTCAAGAAACACACGGTCTACTATGGAGGTTTTCACAGCAGCCATCGTGTCATCATCTGGCTGTGGGACATCCTGTCCAGTGACTTCACTGCTGAAGAGAGGGCTATGTtccttaaatttgttaCCAGCTGCTCTAGGCCGCCTCTTCTAGGTTTCGCCTACCTCAAACCACCTTTCTCCATCCGTTGTGTGGAAGTTTCAGATGATCAGGACACCGGAGACACCCTTGGCAGTGTTCTTAGGGGCTTTTTCACAATCCGCAAGAAGGAGCCTGGTGGTCGACTTCCCACTTCATCAACATGCTTCAACCTGCTAAAATTGCCCAATTACAGCAAGAAGAGCATCTTGCGCGACAAGCTGCGCTACGCTATCAGTATGAACACAGGCTTTGAGCTCTCCTAACTCAGTTGCATCAGGACAATCTTCACAGGAGTCAAAGTCACAAGTCAAAGGGGCATCACCTAAACAAAAGTGGATTCATAAAGGACCTACAAACTctccttttgtctcttttttttttttaacaatcagCCCACTCCCTTGCATTAAAGGGGATGCTGTTTCTGCAGCACAATCCAATTTTTTGCATCTCCCTTTGCCAAAATTCAACGTCTTGTAGGCCTATTTATCTTGATGAAATATCGATATACAGTGGGTAGATCTCTGTTTCTCAGGCTTAACAGAATCATGCTCGCACTCCCATTTAAAGCGAactagaaagcaatacagaTGCAATGCAAGCCATTAGACACGTGGTCAACTCACTCGAGTAAAACCAAGCGATGCATTGTTAATATACTTACAAGCTCGGACTCCATTATCCAAGCAACTTTTAGCTGATATTGGATGAGtcttaaaatgttttgctgAACATAATGCAGCTTTCATAAATGGAAGACAAATCAATGTCTTGTGTTCAACCTCCATGGAGTAGTGGCTCACAGCAGTGATCCTGTGTTGATTACATTATGTCCCATTTTGAGGAGAATCATTTTGACCTGACTCCATTTTCCCCCACTACAAGACGCTGCAGTGCCCTGAGAAAGATGTCCGCCCTCTGGTTTTTATGTTCTCGTTTGAACATCTGCCTCAGTTCTGGTGAAGCAGCACAAtttcttgacaaaaaaaaaatggatcatGCTGTTTGATTTAGAAAAGATGTCCTTGCTGTAGCATTTTTGCTTTTGAGTAAAAAAGAAACTGGAAATGTTTGGGCATTATTTGTATCTGCCCAGCGAAGCAGATACAGCTGTTCATTGGAACACGTCTGTGCTTGaccactcttaaaaaaaaaaaaaaaaaaaaaaatatatgtagtgAAGGTAATCAATAATGTAAGTGTTCATACTAAATACTAGAAAAACTGAAGATTTCTCACTACACCTTTGTATAACGCTGAGTGCCTCATATAATGCCACCCCCCTTTGCTCTCACGTCTGACTGTATTCCAATTGTAACCAATAACCACGTTTATGGGAAACAAGCCATAGAAACGGGGGCTATGTACCTGGACTTTATCTCTCGCTCCTGCTAACAAAAAAGCGCAGAAACCCAACCACTCTATTACCACTGGAACAACAACAACCGAGGAGGGTTTTACTACGATGCCCTCGGATCTCTGTGGACTTTTTAAGCCATGCGGAAAATGAATTTTGAGGTTTAAAAACCTTTCAACATGATGTCATGGACTGGTTGGTCAACCAAATGTGACTGCTTGATTTAATGTTCCCTTGGATGGAAATGTTGCGCACCTTTCTGCCGTTTGTGGCTGTTGGGGTAAAAGGGACATGAGGGTGAATGTTACCCCATCAGCCTAAATACTACTTTACACAGGGTTCAATTAGATCATAAAGGAAAGGAAGTTAGTCATTTAGCAGAAAGAGGACTGTAACTTTTAAaggattaaaaagaaaatatttaccATGTTCTTTATTATGCAAAACAAGTTTTTTTCTGTCATGAATGAGTATGTGTTAATAAGTAACACAAGCTTTAGAGCATACTGGTCATTATTGTTTCTAACTAGTAATATAATGGCGATTAACTtgtgggaaaacaacaaaaaagtgatTATAATGATATAAGACTGGTTGTATTGAATTTACCTGCAGTATACTAATGAGATTACACTATTTTCAGATCTGACAAATCAGTCCTGAGGATCTTACTCCAGCTTTTCTCCTTTTAATCTATTCCAGCAAGAAGTGGAAACACTGTGAATGGATTTATGCGACATGCTACACctggtgtgtgttagtgtgcaaAAGAGATGAAAGATACCTCACAAGCTTGTCTGTCTCGTGATGAGGTCACTCATCGGTTTTAAAAATGATGTCAAGACTAGGCTAGACTTTAAGTGTAACAGTGGACTGCTAAAGCTGACCTTTGACTATCTGCTCTTTtagtacaaaaaataaaaatgatcctGGAAATGTTCCCACCC

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10588 UBE3B; ubiquitin-protein ligase E3 B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83911 lncRNA upstream 83513 18636726 ~ 18637221 (+) True G62667
TU83895 lncRNA upstream 103165 18617074 ~ 18617569 (+) True G62656
TU83839 lncRNA upstream 189423 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 218359 18501762 ~ 18502375 (+) True G62560
TU83772 lncRNA upstream 220228 18500125 ~ 18500506 (+) True G62559
TU83952 lncRNA downstream 7614 18737554 ~ 18742398 (+) False mvk
TU83993 lncRNA downstream 17550 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA downstream 17550 18747490 ~ 18748152 (+) False G62732
TU84005 lncRNA downstream 42815 18772755 ~ 18773108 (+) True G62741
TU84019 lncRNA downstream 134635 18864575 ~ 18864807 (+) True G62755
XM_039802308.1 mRNA upstream 5424 18704132 ~ 18715310 (+) True myo1ha
XM_039802879.1 mRNA upstream 35271 18661157 ~ 18685463 (+) False acacb
XM_039802310.1 mRNA downstream 276 18730216 ~ 18736475 (+) True aldh3b2
XM_039802311.1 mRNA downstream 1961 18731901 ~ 18736475 (+) False aldh3b2
XM_039802309.1 mRNA downstream 1962 18731902 ~ 18736475 (+) False aldh3b2
XM_039802312.1 mRNA downstream 2215 18732155 ~ 18736475 (+) False aldh3b2
XM_039803155.1 mRNA downstream 7578 18737518 ~ 18742399 (+) True mvk
XR_005639481.1 other upstream 39573 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 301144 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 304728 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 389504 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 711416 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 704967 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1747872 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1747872 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1946477 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2858936 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile