RNA id: XM_039802308.1


Basic Information

Item Value
RNA id XM_039802308.1
length 3485
RNA type mRNA
GC content 0.46
exon number 33
gene id myo1ha
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18704132 ~ 18715310 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttggaTCCTCATTTAAATTCTGTATCTGACAGCAGAACAATACAACTTCAGAAATGCAgGGTCAGCTGGACATGGAGGGCGCCCTGACTGCCAGGGACCGGGTTGGAATCCAGGATTTTGTCCTCCTGGATGAAACCACAGAGGCAGCCTTCCTCAGTAACCTCAAGAAACGTTTCAGCAAAGATCTCATCTATACCTATATTGGCACATTGCTAGTGTCTGTGAATCCATACAAAGAGCTGGACATCTACAATATGAAACAGATGGATCTCTACATGGGTGTCAACTTCTTTGAGCTTCCACCACACATCTATGCCTTGGCAGACAACGCCTACCACACCATGCTGACAGAGTTCAACAATCACTTCATCCTCATCTCTGGAGAGAGTGGAGCAGGGAAGACGGAGGCCTCCAAAAAGATTCTGCAGTATTACGCTGTCAGCTGTCCGAGCACCACTCTGCTAAACACCGTCAGGGACAAAATGCTCATGTCTAACCCTGTCCTCGAGGCTTTCGGCAATGCCAAAACACTGAAAAATTACAACTCAAGTCGGTTTGGGAAGTATATGGACAttcagtttgacagccagGGGGATGCTGTCGGAGGCCATATCCTGAACTACATGCTGGAGAAGTCGAGGGTTGTGCATCAAAATCACGGGGAGAGAAACTTCCACATCTTCTACCAGCtagtggagggaggagaggaggacctACTGCACCAGCTGGGCCTGGAGAGAGACAGCCAGCATTACAATTACCTAACccaaGGAGAGTGTGCCATTGTGTCTTCCATTAATGACAGAAATGACTGGAAAACGGTCAAAAACGCACTTCAAATCATCAACATTGATGAGATTAACACTAATCACTTGTTTGGGACCGTTGCAAGCGTTCTCCACTTGGGGAATGTGCAGTTTGACTCCGACAGTAAAGGCCATGCCCTCTTGAACAGCAACAATTCAGAGCTGCGCTGGGTCTCAAATttaCTAGGAGTTGATGCTCACCGTCTCCAAGAGGGACTCACATACAGGAAGATTGAAGCCCAAAAAGATCAGATCCTTAGCCCATTCACAATCGATCATGCCATCTATGCCAGGGATGCCCTGGCCAAAGCCATATATGGACAGACCTTCACCTGGCTGGTCAACAGGATCAACGAGTCCATAGAGAACAAGGACTCTTCAAGGAAGACTGTAATAGGGCTTTTGGACATATATGGATTTGAGGTTTTCTATGTTAACAGTTTTGAGCAGTTCTGTATAAACTACTGCAAGAAGCTGCAGCAGCTTTTTATCCAGTTGACACTTAAGGCTGAGCAGGAGGAATATCAAGCAGAAGATATTGAGtgGGAGCCAGTCCAATTCTTCAATAACAAGATCATCTGTGACCTGGTTGAGGAGAAACACAGAGGGATCATATCAATATTGGATGAGGAGTGTCTCAGGCCGGGAGATGTCACAGACCTCACCTtcctggagagactggaagaaaAGATGGGAAATCATCCTCACTTTGTCACGCACAAACTGGCTGACAAAATGACACGCAAGACTCTGGAGAGGGGAGATTTCCGTCTCTTGCATTATGCCGGGGAGGTCACCTACTGCGTTGTGGGTTTCGTGGACAAAAACAATGACCTGTTATATAAAAGCATTAAAGATCTGATTTGTCAGTCTAAAAATGCTATTGTCCGAGAGTGCTTCTCCACAATGGATCCAGACAGCAGGCGAAGACCAGAAACAGTGGCGACCCAGTTTAAGAGCAGCCTGCTGAAGCTGACAGAGATCCTCATGGCTAAAGAGGCCTGGTACATACGCTGTCTAAAATCCAATGAGTCCAAGCAGCCAGGTCAATTTGACGAAGCTCTGATCAGGCACCAGGTGAAATACCTGGGCCTGATGGAGCACCTCAGAGTCAGACGAGCTGGTTTTGCATACAGACGCAAATTTGAGGTATTCTTAAAGAGATATAAACCCCTGTGCCCAGCCACCTGGCCTCACTGGAGAGGAGTGCCTGCTGATGGAGTAGAAGTGCTGGTTCAACATCTGGGCTACCTGCCAGATGAGTACAAAATGGGACGTACCAAAATATTCATCCGTCATCCAAGGACACTTTTTGCCACAGAGGATGCTTTTGagaaatgtaaacatgaacTGGCGACGAAGCTCCAAGCCAAATACAAAGGATACAAAGCAAAGGGAGAAttcaaaaaacagaaagaagctGCCACTAAGATTGAAACCTGCTGGAGAGGAGCGCAGGCTAGAAAGGAGAGAGATAAGAGAGCCTGGGCTGTAAAAGTCATCAAGAAATTCATCAAAGGTTACATGACCAGAGGGCAAGCAAAAAGCACAGATAACTCGGAGTACCTGGCCTTTGTGAGACAAAATTACTTAAACAGGCTCAAAGGCAACCTGCCAAAGACAGTTTTGGATAAAACCACCTGGCAAACTCCACCAGCTGTGCTGACAGAGACATCAGAGATACTGCGTAAGCTTTACTACCGTCTTATGGTGCGGAAGTATGTGAGAGGAATCACACCCCAGAAAAAAGCTCAGTTTCAACTGAAGCTTCTTACCAGCTCTATCTTCAAGGCCAAAAAGGATAGTTATCCACAGAGTGTCGCTCAGCCTTTTGTGGACACCAGAATCAGTGAACAAGACATAAACATGAAGGTTCTCCAGATGATACGCAATGAGCACATTAAGTACAGTGTCCcggtgattaaatatgataggAATGGTTTCAAACCAAGACCACGACAGCTCATCCTCACCAAGACAGCTGCCTATGTGATAGAGGAAGCCAAGATCAAACAGAAAGTTCTGTATACCTCTCTTAACGGGATTTCGGTCAGTAACTTGACTGATGGCATGATTGTATTCCACATAACATGCGAGGACCGTAAACAGAAGGGGGACCTTGTAATTCAGTGTGACCACTTGTTTGAGTCTTTGACCAAACTCGCTGTCATTGCTAACAAACAGAATGCAATTAAAGTGGTTCAGGGCAGCATCAAGATTGAAATCCAGGCAGGTAAAGAGAGTGCGGTGGACTTCAGCACTGGACAGGAACCCATGGTTTACAAGGCCAAGAACGGACATCTCATGGTGGTTGCCACTCGGGCTCGGACACGGTAACGTGTGTGGGGTTGAGAAGACACACAAGAAGCCCCTGCATATTTCATCAGGAGACCCCTAAGGGAAGATCAACGTGTATACAGGAAACCCAACTGACAAGAAGAGAACCCCAGGATGAGCTTGCTTTGTTGTACAGCAACACATTTCTCATGTATGCATTAGTCAATGATGAATTTTACTTTTCCACCAAAGAATATTAACCTCTCATGAGAGGCTAAGGTTTTAACATAATTCTGTGTTTGAGGATTTGCATCTGCTGTTTTGAGCACTAAAGTTCAAAGCAAAGCCTTAAATTGCACTGCATATCTACAAAACTATTCTAATGTACAGAACACTTTAAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10356 MYO1; myosin I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83911 lncRNA upstream 66911 18636726 ~ 18637221 (+) True G62667
TU83895 lncRNA upstream 86563 18617074 ~ 18617569 (+) True G62656
TU83839 lncRNA upstream 172821 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 201757 18501762 ~ 18502375 (+) True G62560
TU83772 lncRNA upstream 203626 18500125 ~ 18500506 (+) True G62559
TU83952 lncRNA downstream 22244 18737554 ~ 18742398 (+) False mvk
TU83993 lncRNA downstream 32180 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA downstream 32180 18747490 ~ 18748152 (+) False G62732
TU84005 lncRNA downstream 57445 18772755 ~ 18773108 (+) True G62741
TU84019 lncRNA downstream 149265 18864575 ~ 18864807 (+) True G62755
XM_039802880.1 mRNA upstream 18669 18661157 ~ 18685463 (+) True acacb
XM_039802881.1 mRNA upstream 18669 18661157 ~ 18685463 (+) False acacb
XM_039802879.1 mRNA upstream 18669 18661157 ~ 18685463 (+) False acacb
XM_039802883.1 mRNA upstream 18669 18661157 ~ 18685463 (+) False acacb
XM_039802885.1 mRNA upstream 18669 18664274 ~ 18685463 (+) False acacb
XM_039802306.1 mRNA downstream 5424 18720734 ~ 18729940 (+) True ube3b
XM_039802310.1 mRNA downstream 14906 18730216 ~ 18736475 (+) True aldh3b2
XM_039802311.1 mRNA downstream 16591 18731901 ~ 18736475 (+) False aldh3b2
XM_039802309.1 mRNA downstream 16592 18731902 ~ 18736475 (+) False aldh3b2
XM_039802312.1 mRNA downstream 16845 18732155 ~ 18736475 (+) False aldh3b2
XR_005639481.1 other upstream 22971 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 284542 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 288126 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 372902 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 694814 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 719597 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1762502 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1762502 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1961107 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2873566 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile