RNA id: XM_039802310.1


Basic Information

Item Value
RNA id XM_039802310.1
length 3152
RNA type mRNA
GC content 0.45
exon number 10
gene id aldh3b2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18730216 ~ 18736475 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACCAGTGTGGCTCAGCGCACAGGACTAAAGTGTAGGCCTATTGATTGACAGCAAACTCCGTTTAACATCAACATGGCTGTGGGATTGAGAGTGTCTCATAACACCACATTTTCTGGTTTTCCTGAAAAACGTGCATGGCGGATTACGGTGTAAATGCGCAAGCCTAATTCATATTCTCCATTGTGCTCGGTCCCTGTGGCTTTTCATGAGAGGTTAAAGGTGCTGGGAGAACTTTCACAATTCTCCACCTGAACCTGCAGAGTAGGCCTAGCCATGAGCAGTCCGCCGACGAGCCCTTCTCCAGCCAAATGGTTCAAAGCGCTACGAAGGACCAGGCTTGGGGAGCCCTGTTTGAAGACATATCCTCTGGAGTGCGTGGATCTGCTGAAGAGGTCAAGAGTCGCCTTTCAAGCTGGACGCACCCTCAAGGAGGGCTTCAGACTGGCTCAGCTGGAGGCTGTGGTGCAGATGCTGGAGGAACACGAGTGTGGCTTTGTGGATGCTCTTGGAAGGGACCTTCATAAGCCAAAGTTTGAGACCGTCGTGTCAGAACTGATTCTTGTCAAAAATGAGGCACTTCATGCCAACAACAACCTTAAGAAGTGGATGCAGCCGCAGTATGTGGAAAGAAACCTGTCCACTACATTGGACGAGTGTCTGATGGTTAGTGAGCCGCTGGGGGTGGTGTTTATCATGGGGAACTGGTGCAGTCCTGTCCAAACGTGTCTGGTGCCACTGGTAGGGGCCATCGCAGCAGGAAACTGTGCAATCATCAGCCCCTCCGAGTACACCGCTCACACAGCAGAGCTTCTTCATCGTCTTATCCCCTTCTACTTGGACAATGAATGCTTCCATGTGATTCTTGCAGGCGCAAATGACTTGCCTGAAGTTGTGGAACTTAGGTTTGACCATGTCTTCTTTACAGGCAACAGGAAAGAGGGAAGCAGAATTGCTCGGGCTGCAGCTTGCACACTCACACCTGTCACCCTGATTTTGGGTGGCAAGAACCCATGTTATGTGGACCAACACTGTGACATTGCCATCACCGCACAGCGCATCGCCTGGGCACGTTTTCACAATGCTGGACAGAGCTTGGCGGCTCCTGACTACATCCTGTGCCACACTGATATACAAGCACAACTGGTGCAGGCCCTCAAGTGCTACCTGATAGAGTTCTACGGCTCTGATCCCAGAGAGTCCCGCAGTTACGGCCGCATGGTCAATCTAGAGATCTTCAACCGTACGAGAGACATGCTGTGGAGATCAGGCAAAGTGGCTGTGGGTGGGCAAGTGATAGAAGCAGAGAAATATATCGCCCCAACAATTTTGACAGAGGTTGTGGAATCAGATCCCATCATGCAACAGGACGTTTTTGGCCCAGTTGTTCCTGTTCTGACTGTAAACAACATGGATGAAGCAATTGTCTTCATTAATAAGCAAGAGAAACCCCTCTGTGTTTAtgcattttccaaaaacaaCGAGGTCATCTCAAGGCTAATGAGTGAGACCTCTAGTGGAAGCTTTTGCTCTAATGACAGCGTCCTGCAGAGTCTGATGGTGGCTCTGCCCTTCGGTGGAGTTGGTGCCAGTGGAATGGGTTCCTACCATGGCCGCTACAGCTTTGATACCTTCTCTCATAGGAAATCATGTCTGCTAAGAGGAACACGGTTTGAGTGTGTAACCTATCTGCGTTATCCGCCCTATGAGGACCGCAATCTGTCTTTAATGTCATGGGCCTGTACCTTGTCCCAGAGAAGCCAGGGCTGGTGCCAGATCCTGTGACTCTGTGGGAGGGTAATAACGGAGCCATGTTGGAAGAAAGCAGAGTGCCCCCTAACCCCTCAACAGTCCTGATATGCAAATGTATTATAAATAGCTGAGAACAAAACCTAATGGCGTATAGCCACATATAACAGAGGAGGAGCTATAAACACAGTGGTTGTTCAATTTTTGGGTGATGACAAttgtaaaacaaacaagaaaaaggaaaaactctAGTATTTACTCTGCTGCAGTACCATAACTGTACACAAACTCAACTAAAGGTGTTTGATGAAACATTACCTGTGCAAAATTAAATAACCAGGAGGTACATGTATTGGCTGAATGGTTTATTTAGCCACAGTGAAGTTTATTACTGCATGTAGTCTCACATTATGCTTTAACATTATGTTAAAGTTTCATTGATTAAAACAATTTTAGACATtcatatttattaatatatgaACAATAAAAGTGAAATATCTGCAACACCAACCATCCCCAAAAAACAAATTAGGTGTTTGTCTTATTCCCCATGTGAGAATCTGTTCATTCAGGTCTTTTGTAGATTTTCTCCTCGTTGCCTTCTTTTGTGGCTGCATATCTGGCTGCGGTAAACAGATAGTCACTCAACCTGAGTGAAAATATTGGGATATTCATCAGATGTTAAATAgaggatccatgttctcatatTATTTTAAAGAACTTAACTGACCTGTTCAAAAACTTAGCAACATCTGGATCTGCCTCGCCTGCTCGCACAATTGGAGCAACACTAAAGTAAGAACAAAGCTCTGTCAGAACGTATTGTGCTGGAAAAGCAAGCCAAAGGAGGTAATTTTACGCCATTAAAGGCAAGGAGCATGCTGCAACTGACCTGCGCTCTGCTCTCCGACACACTGTCCGAGCCAAGTGCAAAGCTGAGCTGCTCTTTCCACCAGACTGTGATACACAAAGCATTAAGTATCAGTACAACAGGACTTTCATAAGAACTTTGTCTCACAGAGGCACAAATCTGCTTACAGGTAAAATGAAGTTGGTCAGTGGAGGGAGTTCTTCTGTAAATGTATCTATCCAGGTTTCCAGGTCTGCAATTGGCTGAGCAGTAAATTTTGTTCTCCCTTACAAAAAcggaacagaaaaataaataaacccaaGAGATATTCAAGCAAACAAGACAATATTTTACTGCATTAGACCACCCAGCAAGTGCTTACTTATGTGACTTTCTCTTGCAGATGATTGAGGGGTGGCAATATTGGAGCCCACGTCTTGTAAAATGCACTGTATCTGCAATGAAAAAAGCAAAATACCGTCAGAAATTGTATATCTGGCTGAGGTAGAATGTCTGCAATAAAGGAAGTTATTAAATGCTAAATGAAAATCAAA

Function

GO:

id name namespace
GO:0006081 cellular aldehyde metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83911 lncRNA upstream 92995 18636726 ~ 18637221 (+) True G62667
TU83895 lncRNA upstream 112647 18617074 ~ 18617569 (+) True G62656
TU83839 lncRNA upstream 198905 18531010 ~ 18531311 (+) True G62613
TU83773 lncRNA upstream 227841 18501762 ~ 18502375 (+) True G62560
TU83772 lncRNA upstream 229710 18500125 ~ 18500506 (+) True G62559
TU83952 lncRNA downstream 1079 18737554 ~ 18742398 (+) False mvk
TU83993 lncRNA downstream 11015 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA downstream 11015 18747490 ~ 18748152 (+) False G62732
TU84005 lncRNA downstream 36280 18772755 ~ 18773108 (+) True G62741
TU84019 lncRNA downstream 128100 18864575 ~ 18864807 (+) True G62755
XM_039802306.1 mRNA upstream 276 18720734 ~ 18729940 (+) True ube3b
XM_039802308.1 mRNA upstream 14906 18704132 ~ 18715310 (+) True myo1ha
XM_039802883.1 mRNA upstream 44753 18661157 ~ 18685463 (+) False acacb
XM_039803155.1 mRNA downstream 1043 18737518 ~ 18742399 (+) True mvk
XM_039803256.1 mRNA downstream 57775 18794250 ~ 18841202 (+) True fam222a
XM_039802370.1 mRNA downstream 135807 18872282 ~ 18878090 (+) True LOC120560157
XM_039802369.1 mRNA downstream 160148 18896623 ~ 18904773 (+) True ankrd13a
XM_039803869.1 mRNA downstream 187840 18924315 ~ 18952142 (+) True sgsm1a
XR_005639481.1 other upstream 49055 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 310626 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 314210 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 398986 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 720898 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 698432 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1741337 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1741337 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1939942 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2852401 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile