RNA id: XM_039802317.1


Basic Information

Item Value
RNA id XM_039802317.1
length 2059
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC120560133
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18463203 ~ 18469696 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCAATGTGCTCAGCCCTACTGACCTGCCGTGTAGCAGGGCGCTGCTCCAGGGTGTGGTGTGGTGTTCCTCCAGCGCTCGTACACATCAGATCAGCCAGTGTAGCTGAGCCAGGCACAAGAAGATCTAATGAAGAACAACTCTGGGAGGCAGCAGGGTACCTGCCGTTCTCTAGAGCCAAGATAGGATCTTTCTTTCAGGAAACGCCAGTGCTGAAGAACCCATTTCTAGAGGATGCCTTGCTCAGAGGATACCTGAGGCGACACCTGCCCCAGGAGGCTGCTTTCTCAGACTTGTGTGCCTTTGGAGAGCGTGTGGCAAATGAAGTGGACGGCTGGGGTAGAGAGTGTGAGGTTACTCCTCCACGTTTGGTGCACTTTGACCCCTGGGGTCGCAGAGTGGACCACATCGTGACCTCCCCGGCCTGGAAACGCATGAAAGACCTGTCTGCACAGGAAGGACTGGTTGCCATTGGTTATGAGAGGTCATTTGGGGAGTGGAGtcgTGTGTACCAAATGAGCAAGTTGTAcatcttctctccctcctctggtCTCTACACCTGTCCTCTGGCAATGACTGATGGAGCTGCTAAAGTCATCCAGTCCATAGGTGTTTCATGGCCGGTAGACGAAGCCTACGGTCGTTTGACCACCCGTCAGCCTGAACGTTTCTGGACGTCCGGACAGTGGATGACGGAAAGACAGGGAGGATCTGACGTGGCCAGTGGCACAGAGACGGTGGCTGTTCCCCAGACAGATGGTTCATACAAACTCCACGGCTTCAAGTGGTTCACCTCTGCTACAGACGCAGACATGACTCTCACGCTGGCCAGAGCGCAGGACAGAACAGGAGCAACCACGCCGGGCAGCAGGGGTTTGTCTTTGTTCTACGGAGAGGTGAGTAGAGATGAGGGTGGACGACTGAAGGGTATAGAGGTTCAGAGACTGAAGGACAAGCTGGGCACAAGACAGATGCCGACTGCTGAGTTACTGCTGGACGGCCTGCCGGCACACAGGCTCTCAGAGGAAGGGAAAGGTGTGGCCTCCATAGCTAACATGCTGACTATAACCCGGATCCACAACAGCATTTCTGCAGCGGCCGCGATGAGAAGGGTGGTCCAGTTAGCTCGTGACTACGCCACTCGCCGCACTGCCTTTGGAAAGCTTCTTAAAGACCACCCGCTGCACATGCAGACTCTCGCTAGGATGGAGGTGGAGACTCGTGGAGCGTTCCTTCTGGTGATGGAGGTGTGCCGTCTGCTGGGCCGAGAGGAAAGCGGCATGGCAACGCAACTGGATGCACACCTGCTGCGTCTGCTCACTCCTGTGGCCAAACTGTACACTGGGAAGCAGGCGGTGGCTGTGGTGTCAGAGGGTTTGGAAAGCTTCGGTGGACAGGGCTACATTGAGGATACCGGGTTGCCTGGTCTACTTCGCGATGCACAGgTGTTGAGTATATGGGAAGGTACCACAAATGTTCTGTCTCTGGACGTGCTGCGCTCTGTGGCTCGTAGCTCAGGAATGGTTCTTCACGCTTACTTCACCCATGCCAAGTCCCTGCTTGCAGGTGCATCAAATGCTTCTTCATTGGCCCCGGCGGTGAAAGCAGTAGATGGTGCTCTCTCTGAGCTGGAGGACTTTGTTCAGATAGCAGCTACAAGAGCACCCGGCTACCTGGAACTAGCAGCCAGAGACCTGGCATACAGCCTGGCTCGCATCTACACGGGTGCGCTACTCATTGACCATGCATGTTGGAAGGGAGCCTCTTCATCTGACACCTATGCAGCTCTCAGGTGGTGTGAACACGACTTGTGTCCTGTGGCAACTAAACAGGCGAGAGGCTGCTACGATCTCAGCACAGCACCACTTGATGCTGCGCTGGTGTATGACCGGCCCATCCAAGGCTGAATGAGTGTTCACTGATGTGAGGCCATTGCTGTGCCTCACTCAAAACTCAATTATGTGGCAGATCCACTTACTGTATCCCACTCTTTAAATTGTGTAGATGACTGAGACcatgttttattaaaacaaattaaaacccagaAATGGAACCGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83803 lncRNA downstream 65257 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 105450 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 130807 18331384 ~ 18332396 (-) True G62568
TU83781 lncRNA downstream 133311 18329603 ~ 18329892 (-) True G62567
TU83677 lncRNA downstream 158847 18304157 ~ 18304356 (-) True G62493
TU83856 lncRNA upstream 53727 18521564 ~ 18521875 (-) True G62629
TU83857 lncRNA upstream 67096 18534933 ~ 18535281 (-) True G62630
TU83851 lncRNA upstream 71289 18539126 ~ 18540015 (-) True G62625
TU83955 lncRNA upstream 267071 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 279356 18747193 ~ 18748609 (-) True G62733
XM_039803231.1 mRNA downstream 874 18455227 ~ 18462329 (-) False slc8b1
XM_039803229.1 mRNA downstream 874 18455227 ~ 18462329 (-) True slc8b1
XM_039803233.1 mRNA downstream 20185 18437676 ~ 18443018 (-) True iqcd
XM_039803232.1 mRNA downstream 22092 18437676 ~ 18441111 (-) False iqcd
XM_039803097.1 mRNA downstream 118680 18333094 ~ 18344523 (-) False si:ch211-166a6.5
XM_039802316.1 mRNA upstream 2318 18470155 ~ 18487380 (-) False morc2
XM_039802315.1 mRNA upstream 2318 18470155 ~ 18487380 (-) True morc2
XM_039802321.1 mRNA upstream 20325 18488162 ~ 18492407 (-) True zgc:158398
XM_039802320.1 mRNA upstream 24905 18492742 ~ 18497861 (-) True plbd2
XM_039802322.1 mRNA upstream 30126 18497963 ~ 18504897 (-) True LOC120560136
TU83818 other downstream 20378 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 76934 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 82701 18377602 ~ 18380502 (-) True G62580
XR_005639489.1 other downstream 159341 18298901 ~ 18303862 (-) False fancg
TU83669 other downstream 166525 18293256 ~ 18296678 (-) False LOC120560503
TU83834 other upstream 22035 18489872 ~ 18492390 (-) False zgc:158398
TU83852 other upstream 42318 18510155 ~ 18512261 (-) True G62626
unassigned_transcript_263 other upstream 485063 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 485653 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 633404 19101241 ~ 19102450 (-) False ficd

Expression Profile