RNA id: XM_039802324.1


Basic Information

Item Value
RNA id XM_039802324.1
length 3425
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC120560137
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18512509 ~ 18609942 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAGTCTAACCCGTCACTGATGATCGCTTGCCACAGCGTGCTTTGGCTGTCAATCACAGTCTGTCAATCCCCACACGAGTCCGCTGAGACTGTTTAGGAAGATTATGTGAAGCAGCTGACGTGTGCGATGGCCAGCCTGTACCTACAGGTTCTACACACAGCTCTGTGTTATTGTTACCTCCCAACCAAGCAGCCCAGCCCAAGGATCTGACCgcacctccccctccctccccctggGAGTCCCTCAACCCTAGGCCCACCATGGGAGGATGCTTCTCCAAACCCAAACCAGTTGAAGTTAAAGTGGAACTGTCTCtcctggaaaaagaaaaagaggtggATGGGCTGTCACCTAATGGCAAAGCGAGTCCCTTTGCTGACAGCAGACCTAACGGGGCCCTGGGACACGGCTCTGATGATGACTCCACACCGCTCCCCCTCTACCACAAACCACGGGACTATGTGGAGGCCTCCGTCTGTCATGTTAAAGATCTGGAAAACGGAcagatgCGAGAGGTTGACCTGGGAAGTGGCAGAGCTTTGTTGATCAAAGAACACGGGGAGTTCTCCGCCATGGCCCACAAGTGTCCACACTACGGAGCACCTCTGGTCAAAGGTGTGTTGTCAAAAGGACACGTGCGCTGTCCGTGGCACGGTGCTTGCTTCAACATTGCAACAGGAGACCTCGAGGACTTCCCCGGGCTGGACAGCCTGCCTACCTTCCAGGTCAGAGTTGAAAAGGACAAGGTGATCATTCGTGCAAACAAGCAGGCTCTTCAGTCACAGAAAAGGTCAAAGCCCATGGCCCGATGCTCAGCAGTTATTAACTCCAGCATGGGCTTCAGCCATGTTCTCATTATTGGCTCAGGTCCAGCAGGTCTGGTGTGTGCAGAGACACTGAGGCAAGAGGGCTTCACCGACCGCATCGTCATGTGCACCATGGACAGACATCCTCCATATGACAGGCCTAAACTGAGTAAGTCCTTAGacagcacagcagagcagcTGAGATTGCGCTCCATGGAATTCCTGCAGGATCATGATATTGAACTGCTCACAGAGAAAGAGGCTGTGGCGATAGATGTGAAAACACGTTCTGTGACCTTTGAAGATGGCTTGAGGATGGAGTACAGGAAACTCTTTATTGCTACAGGAAGCAAACCCAAACCAATGATCTACAAAGGCAAGGACGTCAGGAACGTGTTTCACCTCAGGACGCCCGAGGACGCTAACAGCATAGCACGGCTGGCAAACAACAAGAACGCTGTGATTGTGGGAACGTCATTTGTTGGTATGGAGGTGGCTGCAGCTCTAACTGACAAGGCCCACTCTGTCTCTGTCATCGGGATCGAGACAGTCCCCTTTAAAAAAGCTCTCGGAGAGAAAGTAGGGAAAGCCATAATGAAGCTGTTTGAGGTAAACAGGGTGAAGTTCTACATGCTGAACGAGGTGGCAGAGATGATTGGCCATCATGGACAGctaaaagagGTGGTACTAAAGAGTGGGAAAGTTCTGCGGGCAGACGCGTGTGTCATCGGAGCAGGAAGTATTCCTGCAACAGGCTTCCTGAAACCGAGCggcatccacatggactccaaGGGCTTCATCACTGTCAACAAGATGATGCAAACAAGTGCTGAAGGGGTCTTTGCTGGAGGAGATGTGGTGGTGTTTCCTTTCCCACCACGCAACAACAAGAAGGTGAACATCCCTCACTGGCAAATGGCTCATGTACATGGAAGGGTGGCAGCTCTCAGCATGATGGGCAGAGCCGCTGAGATCCAAACTGTGCCTTACTTCTGGTCAGCCATGTTTGGGAAGACCATACGCTATGCAGGTTATGGTGAAGGATTCGATGATGTCATAATACAAGGAGATCTGGATGAACTGAGATTCGTGGCATTTTACACTAgGAGTGAGGAGGTGGTTGCTGTTGCTAGCATGAACTATGATCCCATTGTATCCCGAGTGGCAGAGGTCTTAGGATCTGGAAAGACGATTAAGAAACGAGATGTGGAGATGTTAGCACGGCTTGGCAAGACTGGAGACATTTCCTGGCTGATTGACAAAGGCTCTCAATGACTTCACATCTGAAGGACAGACCCAAAATCCACTAGACACCTCAATATGGACACTTATGGTGCTGAGACACTGAGCAGCTATCccggtccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgaccgtATCTGTTGGAGACACAGTGAGGACGACACTGAAACCTGCTTTTGTCCCTGAGAGACACTCTAACGTGACAAACAGAGCCATACACGTTTTGAATACACCGAATCGCTGTGTTGGCAGGTCTTTATGACAATGTTGTAACGCTTCACAAACAAAGCAATTTTGGATTCTGCCTCTGTGCTGCTGCAAGACGTATCTACTTGTACACTTTGTTTATAAGATGCCAGGGATGGgtattggcatttttttgtaCAAATAACATTGTATATAGATATAATCCTGAATGCACTGTAACAAAATAAGAACATACAATTTGAACTGAATTTTTCTAAGTTTTAAATAACAGCTTTGGTTGTATGCTCGCATACATGCCTTAGATCTGCATGCTATAATTTACTATAATAGGAGTTAAAAATAAGTCCCTAAACAGAGAGTTTTCAGTCTAGATGCATCAGCAAACAAAGTTTTTAAAtgctaaaaacaaactgcaaGAACCGTGAATGCGGCTTTAACAGactcactaacacacacttGCAGTTTTAATTCGTAATAAATGACAATTTCTAGAATTACAAAATATTTGTATTGGTTGCCATGCTGCTGTAGTAGATTGCACAAATAAAATTCAAATTATACTTTGATCAACCACTAGTGCTTGCACGATAGAATCATGAATTTTCTAAAGAATATCACCCCTTTAGACAAATCCAGTAGTAGTTTAAGGTAGCAAGTAGAAGTAGTTTCGATAGCGGTCACCTCCATTGGGATATTCTTTGTTACTAACTCAGGGAACTGAGGGTTGTCGCCTGGGCTTACAGGCAAAATAAGCAAAAATGAATTTGtgctttaatatttttttcccagTTATTGTAATTTCACCGCTTCTCTCATGTTCATTCAGAACGGCTTGGAATGGTTGTAACATGGATGCTTGATTACATCCTGGCGTGCTGATCCCTGACACATGAGTCAACTCAGCGGTTTAAAAAGCATCTTTCTTCCTACAGAGAAGCCTGGAAGGGCATTTTTATAACtgaactttgaaataaaagtcttCCAACAACAGGTA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83851 lncRNA downstream 47804 18539126 ~ 18540015 (-) True G62625
TU83857 lncRNA downstream 52538 18534933 ~ 18535281 (-) True G62630
TU83856 lncRNA downstream 65944 18521564 ~ 18521875 (-) True G62629
TU83803 lncRNA downstream 189873 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 230066 18355242 ~ 18357753 (-) True G62571
TU83955 lncRNA upstream 124966 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 137251 18747193 ~ 18748609 (-) True G62733
TU84039 lncRNA upstream 227032 18836974 ~ 18845777 (-) True G62771
TU84040 lncRNA upstream 295377 18905319 ~ 18906567 (-) True G62772
TU84129 lncRNA upstream 347315 18957257 ~ 18961477 (-) True G62817
XM_039802329.1 mRNA downstream 15482 18564189 ~ 18572337 (-) False LOC120560140
XM_039802330.1 mRNA downstream 15483 18564189 ~ 18572336 (-) True LOC120560140
XM_039802333.1 mRNA downstream 29798 18536431 ~ 18558021 (-) True LOC120560142
XM_039802328.1 mRNA downstream 33255 18549347 ~ 18554564 (-) True LOC120560138
XM_039802334.1 mRNA downstream 38608 18536431 ~ 18549211 (-) False LOC120560142
XM_039802336.1 mRNA upstream 763 18610705 ~ 18611694 (-) True cldn26
XM_039802338.1 mRNA upstream 3528 18613470 ~ 18621154 (-) False lztr1
XM_039802337.1 mRNA upstream 3528 18613470 ~ 18621153 (-) True lztr1
XM_039802339.1 mRNA upstream 4515 18614457 ~ 18621154 (-) False lztr1
XM_039802341.1 mRNA upstream 12879 18622821 ~ 18628475 (-) True gal3st1a
TU83852 other downstream 75558 18510155 ~ 18512261 (-) True G62626
TU83834 other downstream 95429 18489872 ~ 18492390 (-) False zgc:158398
TU83818 other downstream 144994 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 201550 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 207317 18377602 ~ 18380502 (-) True G62580
unassigned_transcript_263 other upstream 342958 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 343548 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 491299 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 569563 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84427 other upstream 939519 19549461 ~ 19554894 (-) False LOC120560442

Expression Profile