RNA id: XM_039802333.1


Basic Information

Item Value
RNA id XM_039802333.1
length 1442
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC120560142
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18536431 ~ 18558021 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaatggatagcaaatggatctgaatgaagaaacataaaaataaaactcaacgCATTTCTCTGTGAGGGCTTGCCTCGCCCTCAGGGGTATGCTTGGAtaagtaacaaaagaggacgttgaaggctgactatcatcttttctgccatggcaagcctgcttcatgtgtctgttcattgTCGAAGTCCCCATTTTTTTGCTGTCATAGGCGAGCAGCgtgccgcacttaatgcactcgaCAAAGCCAACACatatgttgtcactgaCCACTTGTTATGGATCAGTGTATGTCTCCCTGTCCTGCTTGTTTTCCTCTTCCCTTTTCCGCTGTGTTTGTTGTCCGTGTGTTCGTTCCCACCTGCTGGCGAGAGGCGTGTCCTGGAGAAACTAGGTCAAGAGGCGTGGCCACTCTCCGTTTTCCAGCTCAGCTGCAGCACATCACCACTAATCACTCAGCAGTTATCTACCCGGGCTGTCCACCTCTACAGCGCCAGTTCGTTACAACCGTTCGTGATCCTGTCTCTGGACCTGCTGCTCACCTGCTGTCATCTGCTTCCTTGCTGCCTGCTCGCCTCACTGCTCCGCTCTCAACCAGCCATTCCACCCAGCCCTCGTCTTCGCTGCCTGGCCGCACACCCGCCTTCTGATCTCCGGCTTCAAGTGGCGCTGCAGTGGAGTGGGAGAGACTCATCACAAGGATCCATGTTCGCACTTCAACTTCAGCCCAGCAGAGTGCCTACAGGAACCCAGTCCGGGTTCAGACGCCGACGGAGAGAACCAGCGGTGCTGACTTCTGCTGACTTCCTGCGTGGTTTCCTGACAGAGCAAGGAGACTGGATCCCACCCCCTGACCCTGGGCCTGCTGACACACCAAAAAAGCTAAGGATGGCTTTTTCCTACAGGATGCAACGCTTGAATGCCAGCACAGCAAGAAGGACACCAACGCCAACAAGGGGAGCGAGGAGAATTGGGTCAGCAGTAAATCCACAATGAGACCCTGGGCTCCCCTCTGATCTGTCACCTTCCAGTCAACTGTTAAAGGGCCAGAATGTTCAGCCAATTCTTCGGACAGAAAGGATGAGGGCATTTTTTACAGCAGCTGCAGCCAAGCTAGGCGTGCAAATGTGACGTCAAGAGTGCGCCATAGCCTGTTAAGGTTTTTGGTGACGTTGCCCCCTGGTGCTTGTCAATGCTGGTGCTGGGTGCATGAGAATGAACCAGCAGCGATCTGAGATTTTGTCCCAATTTTCAGATTGGACAACAAGGAACTTTGAAAATCTTGATttcagactcttttttttttttccccagtgtgCATCTTTCACTACACAATGATGAAGAATGTTTTTCTGTGCTCGCTCCATCTGAACTGACAGCATATATTTAAGTATGTGTGTATCAGTTTTTAACTCTTTTGTGATTAGGATCACAAAGATCAAACCTA

Function

GO: NA

KEGG:

id description
ko04977 Vitamin digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83857 lncRNA downstream 1150 18534933 ~ 18535281 (-) True G62630
TU83856 lncRNA downstream 14556 18521564 ~ 18521875 (-) True G62629
TU83803 lncRNA downstream 138485 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 178678 18355242 ~ 18357753 (-) True G62571
TU83782 lncRNA downstream 204035 18331384 ~ 18332396 (-) True G62568
TU83955 lncRNA upstream 176887 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 189172 18747193 ~ 18748609 (-) True G62733
TU84039 lncRNA upstream 278953 18836974 ~ 18845777 (-) True G62771
TU84040 lncRNA upstream 347298 18905319 ~ 18906567 (-) True G62772
TU84129 lncRNA upstream 399236 18957257 ~ 18961477 (-) True G62817
XM_039802322.1 mRNA downstream 31534 18497963 ~ 18504897 (-) True LOC120560136
XM_039802320.1 mRNA downstream 38570 18492742 ~ 18497861 (-) True plbd2
XM_039802321.1 mRNA downstream 44024 18488162 ~ 18492407 (-) True zgc:158398
XM_039802316.1 mRNA downstream 49051 18470155 ~ 18487380 (-) False morc2
XM_039802329.1 mRNA upstream 6168 18564189 ~ 18572337 (-) False LOC120560140
XM_039802330.1 mRNA upstream 6168 18564189 ~ 18572336 (-) True LOC120560140
XM_039802324.1 mRNA upstream 29798 18587819 ~ 18609942 (-) False LOC120560137
XM_039802323.1 mRNA upstream 29798 18587819 ~ 18607135 (-) True LOC120560137
XM_039802325.1 mRNA upstream 29798 18587819 ~ 18607134 (-) False LOC120560137
TU83852 other downstream 24170 18510155 ~ 18512261 (-) True G62626
TU83834 other downstream 44041 18489872 ~ 18492390 (-) False zgc:158398
TU83818 other downstream 93606 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 150162 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 155929 18377602 ~ 18380502 (-) True G62580
unassigned_transcript_263 other upstream 394879 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 395469 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 543220 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 621484 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84427 other upstream 991440 19549461 ~ 19554894 (-) False LOC120560442

Expression Profile