RNA id: XM_039802342.1


Basic Information

Item Value
RNA id XM_039802342.1
length 8295
RNA type mRNA
GC content 0.50
exon number 48
gene id pole
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18642871 ~ 18659829 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCTttgttcttcctcctctctgcgCTGCTCTCGCGGCAACTGCAGGAACGCGccaaaataagaaaacacaagCAGCGTCAGTGACAGTGACAGAGAAAACTAGACGACTATCCTTTGAAATAACTTCGAAATCTTTTTCAAATGCTGCTTTCCTGACAGTCTTATAAAAAGAGAGCGGGAGTTTATTTTATTTCGCCGTGTTGTAGCCCACAGACCGCGACAGGAGATGGTTCTGCAAAACAGTGGACGGTACAAAGCGGAGCGAGGACAAGGTGGAGGAGACCAGGAAAACCAGGACGATGGATCTTCCATGTCGGCCCTCAAGCGGCTGGAGCGCAGCCAGTTCACCGACGAGATGGACGCCCGCTTCGGTTTCGACAGGATGAAGGAGCCGGGGGAGAAAACAGGCTGGCTGATCAACATGCATCCTaCTGAGATCCTGGATGATGACAAGAGGATGATCAGTGCTGTGGACTATTATTTCATACAGGAGGATGGGAGCAGGTTTAAGGTGGCCCTCCCCTTTAAGccatatttttacatttccacTAAAAAGAACTGCGAAAGAGAAGTCATCTCATACATGTCTAGGAAGTTTCAAGGAAAGGTGGCGAAGCTTGAAGTTATCCCAAAAGAGGACCTAGATCTGCCAAACCATCTAGTTGGACTGAAGAGAAGCTACATCAAGCTTTCATTCAGCACTGTGGACGAGCTCATCAAAGTCAAGCGTGAGATCTCGCCGGCTGTACgcaagaacagagagagggagcagtCCAACGACGTCTACACCTCAATGTTATCAAGTGCCTTATCGGGTGGCAATGTGACCTCAGCAGAGGAAGACGGGATGTCAAAGAATATTTCGGACCAGTTAGACAACATATTGGACATGAGAGAGTATGATGTGCCCTATCATGTGCGATTGTCCATTGACCTCAAGATCCACGTGGCTCACTGGTATAATGTTCGATACAGAGGCAGCGCCTACCCACCAGAGATTGTACGGAGAGATGATCTTGTGGAACGCCCCGACCCTGTTGTTTTGGCTTTCGACATCGAGACCACCAAACTTCCACTGAAATTCCCAGACGCAGAAAGCGATCAGATTATGATGATCTCCTACATGATTGATGGACAGGGGTTTCTAATCACAAACCGAGAGATTGTCTCGGAGAACATTGAAGATTTTGAGTTCACTCCCAAACCGGAATATGAAGGGCCTTTCACCGTTTTTAACGAAGATGATGAGGCGGCTCTCATTCAGAGGTGGTTTGATCACGTTCAAGAAACCAAGCCTAACATCTTTGTAACCTACAATGGTGACTTCTTTGACTGGCCTTTTGTTGAGACTCGGGCCGCCCTTCATGGATTGAACATGCATAGGGAGATTGGTTTCCAGAAGGATAACCAGGGAGAGTACAAGTCCAGTCAAGCTATCCACATGGACTGCTTAAGGTGGGTAAAGAGAGACAGCTACCTGCCGGTGGGGAGTCATAATTTGAAGGCAGCAGCGAAGGCTAAATTGGGCTACGACCCAGTGGAGCTGGACCCGGAGGAGATGTGTCGCATGGCAACTGAGGAGCCACAGACTTTAGCCACCTACTCTGTGTCAGATGCTGTGGCCACATATTACCTGTATATGAAATATGTTCACCCCTTCATCTTCGCTCTGTGCACCATCATCCCCATGGAGCCTGATGAgGTGCTGCGTAAAGGTTCTGGGACCTTGTGTGAAGCTCTGCTCATGGTGCAGGCCTTCCACGCAAACATAATCTTCCCCAACAAGCAGGAGCAGGTCTTTAACAAACTGACAGACGACGGCCACGTCATGGACTCTGAGACGTACGTGGGCGGCCACGTGGAGGCGCTGGAGTCAGGAGTGTTCCGCAGTGACATCCCCTGCCGTTTTAAGATGAACCCAGCTGCGTTTGACTTCCTGCTGCAAAGAGTGGAGAAGACCATGCGCCATGCcattgaggaggaggagaaaatcCCTTTGGAGCAAGTCACCAACTTTGATGAGGTTTGTGAGGAAATCAAAAAGAAGCTGACTTCGCTGAAGGAGGTCCCAAACAGGATTGAATGCCCGCTCATCTACCATCTGGACGTTGGGGCGATGTACCCCaatatcatcctcaccaaccgcctgcagCCTTCCGCTATGGTTGATGAGGCCACTTGTGCTGCCTGTGACTTTAACAAGCCTGGTGCCACCTGCCAGAGGAGGATGGCCTGGCAATGGAGAGGGCAAATCATGCCTGCTAGCCGCAGTGAGTTCCACCGCATCCAGCAGCAGCTTGAGTCTGAGAAGTTCCCGCCATTTTTCCCCAACGGTCCGCCTCGGGCTTTCCATACACTCAACAGAGAGGAGCAGGCCAAACATGAGAAGAAACGTCTGGCAGACTACTGTAAGAGGGCCTATAAGAAGACACACGTCACCCGGCTGGAGGAGCGAGTCACCACCATCTGTCAGAGAGAAAACTCCTTCTATGTCGACACCGTAAGAGCCTTCAGAGATCGTcgttatgaattcaaaggaCTCCACAAGGTGTGGAAGAAGAAACTGTCGGCAGCTCAGGACAGCGGAGACGCTGCTGAGATAAAGCGCTGCATAAACATGGAGATCCTGTACGATTCTCTTCAGCTGGCGCACAAGTGTATTCTCAACTCTTTCTACGGCTACGTCATGCGGAAAGGGGCGCGCTGGTACTCCATGGAGATGGCTGGCATCGTGTGCTACACTGGAGCCAACATCATCACTCAGGCCAGAGAGCTCATCGAACAAATAGGGAGGCCCCTGGAGTTGGACACTGACGGTATCTGGTGTGTCCTGCCCAACACCTTTCCTGAGAACTTTGTGGTGAAAACCAGCAATGAGAAGAAGCCCAAGGTGACCATCTCTTACCCAGGGGCCATGCTGAACATCATGGTGAAGGAGGGATTCACCAACGATCAGTACCACGAGCTGGTGGAGCCCGCGTCCGTCACCTACAACGTCAGGTCGGAGAACAGCATCTTCTTTGAGGTGGATGGACCGTACCTGGCCATGATCCTGCCTGCCTCCAAGGAGGAAgggaagaagctgaagaaaagGTACGCTGTGTTTAATGAGGACGGCTCTCTGGCTGAGCTGAAGGGATTTGAAAtcaagagaagaggagagctcCAGCTCATTAAGATTTTTCAGTCGTCAGTGTTTGAGGCTTTTCTCAAAGGTACCTCTCTGGAGGAGGTGTACGCCTCTGTGGCCAAAGTGGCTGACTACTGGTTGGATGTTCTGTACAGCAAGGCTGCCAACATGCCAGATACGGAGCTGTTTGAACTTATTTCAGAGAATCGTTCGATGTCCAGAAGGCTGGAGGACTACGGAGAGCAGAAGTCCACTTCTATCAGCACAGCTAAGAGACTGGCTGAGTTCCTGGGAGACCAAATGGTGAAAGATGCTGGTCTGAGCTGTCGCTACGTCATCTCCCGAAAACCAGAGGGTTCACCTGTCACAGAAAGAGCCATTCCTCTGGCCATCTTCCAGGCAGAGCCCAGTGTGAAGAAACATTTCCTTCGTAAGTGGTTGAAGATGCCCAGCCTGCATGACTTGGACATCCGCTCTATCCTTGATTGGAGTTATTACATAGAAAGGTTGGGTAGTGCCATTCAGAAAATCATCACAATTCCTGCAGCGCTTCAACAGGTGAAGAATCCGGTACCCAGAGTAAGGCACCCTGACTGGCTTCACAAGAAACTCCTGGAGAAAAATGATATCTACAAGCAAAAGAAAATCAGTGAGCTGTTCACCAGTGAGGGCAAGAGACAGGTGGCCCATCAGCCTCTTGAAGCAGGCCAAGCCGCAGACATAGAGGACTTTGGGATGCCAGCCAGACCTCTGCAGCCAGCCATACTCATCAGCACTAAGCGGAAGCGGGCTTCTCAGGGAGAGGACAGCCAGGTGGAGTCTCAGGATGTCGAGCTCACTCAGTCCTGGAGAGAGATCCTGGGGCCACCCCCACCTATGGGAAAGACACGGGAGGAGCGTCTAGTTTGGCTGCGTTACCATAAGAAGAAGTGGGAGCTGCAGCTGAggcagaggaaggagagaaagaagaagaggaggctgcTGGATGGTGAAGCTCAACCCGTAGGGGGAGGAGTGATCCGAGGCGGACCCACCACCGGCCTGGGAAGTTTCCTCCGCAGAACAGCACGCAGCATCCTGGACATGCCATGGCAAATTGTGCAGATTGCAGAGACCAGTCACCCTGGTCTGTACAAGTTGTGGGCTGTGATTGGACATGACCTCCATTGCATGAAGCTCAACATCCCACGTGTCTTCTATGTCAATCAGAAAGTCCCAAAACAGGAAGAGGGAGCCACATACAAAAAGGTGAACCGCATGCTGCCTCGCTCTAACATAGTGTACTACCTTTATGAGTACTGTGTGCCAGAGGACATGTACCAGGAGCACATCAATGAGATCAACGCTGACCTGTCTGCCCCAGACATTGAAGGAGTCTATGAAACACAGGTCCCGTTGCTGTTTCGTGCACTGGTGCAGCtcggatgtgtgtgtatggtcaATAAACATGTTGTGAGGGATCTGGCTGGCAGGGAGGCTGACACTTTTGACCTGGAGCATCTGGAGATGAGGTCTCTGGCCCAGTTCAGCTACCTGGAACCTGgGAGTGTTCGCCACATGTACCTTTATCATCACAGTCAGGGTCACAAAGCTCTGTTTGGCCTCTTCATCCCTTCTCAACGCAAAGCCAGCATCTTTGTCCTGGACACAGTCAGAAGCAACCAGATGCCCAACCTGACTAACCTCTACACAGCTGAACGCACTGCTCTCCTAGAGAAGACAACAGAGGAGCTCCTGCCTCCAGAGAAACACAACTTTGAGGTCCGAGCTGAAAACAACGCAAAGGCTATTAACCGCGCTCTGCAACGCATACTGCTAAACTACAAGGAGGAGCGCCGTGGACCCACCCTCATCGCGGTGCAGTCAAACTGGGATTTGCGGCGGTTGGCAGCAGGGATGCCGGTGCTTGAGGAGTTTCCAGTCGTTCCAGTACATGTGGTTGATGAGATCAGCTATAACGTGCTGGACTGGCAACGCCACGGTGCCCGGCGCATGATCCGCCACTACCTCAACCTAGACAGCTGCCTGTCACAGGCTTTCGACATGGCCAGGTATTTCCATTTACCTGTGGGGAACTTGCCTCAGGATGTGTCCATCTTTGGCTCAGACTTGTTCCTGGCAAGACATCTACGGAAACACAACCACCTGCTGTGGCTCTCACCCACAGCCAGGCCCGACCTCGGAGGAAAAGAGGCTGATGACAGTCGTCTAGTTATGGAAAGTGATGACAGGGGCTCTGTGGAGATCAATGCTCAAGGATGCTATTCCACAGtgtgtGTGGAGTTGGACCTGCAGAGCCTGGCGGTGAACACCATCCTCCAATCACAGCATGTCAATGACATGGAGGGCGGAGCTAGTCTGGGTGTCAGTTTTGATGTGATCCAGCAGGCCTCGTTGGAGGACATGATGTCAGGGAACCAGGGAGCCAGCGCTCTCGCTAGCTATGATGAGACTGCTCTCTGCTCCAACACCTTCAGGATATTGAAGAGCATGGTGGTTGGATGGGTCAGAGAGATCACCCAGTATCACAACGTGTATGCAGACAACCAGGTGATGCACTTCTACCGATGGCTGCGCTCCCCCAGTTCTCTGCTCTATGACCCCGCGCTGCACCGCACCCTGCACAACATGATGAAGAAGGTGTTTCTACAGTTGGTTTCAGAGTTCAAACGCCTGGGCTCGACGGTGGTGTATGGCAACTTCAACAGGATCATGTTGTGCACAAAGAAAAGGAGGATAGATGATGCCATAGGCTATGTAGAATACATCACCAAAAGCATCCACTCCAGAGAAATCTTCCACTCTTTGTCCATCTCTTTCTCCCGATGCTGGGAGTTCCTGCTGTGGATGGATCCGGCCAACTACGGCGGCGTGAAGGGCAAACTGCCCTCCAGCATCATGTATGGAGAGGAAGGAGCCCAACAGAAGAAAAAGAGCCGAGGGGAGGGAGATGAGGAAGGCAGTGATGATGAAGACGAGGATGAAGCTGTTGTGGATGAAGATGAAGGTGACGGAGAGACAGACGAGGTGGAGGAGCTGATAGAGAGCAACTGGAACATCATGCAGTATCTGCCCCAAACTGCCTCCTGTCAGAAATACTTCCTCATGATTGTCTCCGCCTACATTGCAGCCGTCTACCACAGCATGAAAGAGGAGCTGAGACGCAACGCTCCTGGAGCAACACCAGTTAAGAGACGTGGAGGCAGCCAGGCTTCCCAGCAGGCCGTGGGGGATTTGAGTGCTCTTCCTGGAATGATCTCCTTCTCTCAGGAATATGTGTCTAGTGAGTTGACACAGAACTTTTTCACCATCACTCAAAAAATCCAGAAGAAAGTGACAGGTACCAGGAGTGTCAACCAGCCCTCAGAGATGTTCCCCGTCCTTCCTGGATCCCACCTGCCACTCAACAACCCAGCACTGGAGTTTATCAAATATGTCTGCCAGGTCCTTTCACTGGACGCCAACATAGTCAACCAGGTGAATAAGCTGAAGAGAGACCTCCTGCGTCTGGTGGACGTGGGAGAGTTTTCCGGGGAAGCCCAGTTCTGTGACCCGTGTAACTCCTACATCCTGCCAGAGGTCATCTGCCACCACTGCAATTTCTGTCGTGACCTCGACCTCTGCAGGGACCCATCTGTGGCACAAGATGGATCAGTTTTGCCTCAGTGGTTCTGCTCCAACTGCCAGGCGCAGTATGAGACGGAGTCTATTGAGATGGCTCTGGTGGAGGCTCTGAAGAAGAAACTGATGAGCTACACTCTGCAGGACCTGGTGTGTACAAAATGTAAAGGAGTGAAGGAAGCAAACATGCCCCTGTACTGCAAATGTGCCGGAGACTTTGACCTCACTTTCCCAGCCAAGaGCTTCTTTGAGCAGATCACGGTGTTTCGGAACGTAGCGTCCCACTACAAAATGAGCTTCCTGGACGAGACCCTTGACTGGTTGCTTGTCATGAGCCCACAGATCAGCCAGAACGCTCACTGAACGTCACATCCGCCACAGAGATCCAACCCTCCTTCAGCTGCATCTGAGAAAACACTTGATTCTGAAACGTTTCTGCCCTTGTTCATCAGCCTTGGTAATGTCAGTTTCTATGCTGTTTGATGGTTTGGGATCAGGACATTGGTGAGGCAGGTTGGAGGAGAAATATGTGGACTGTAGATATGTCTGAAGTCTTGATTATGTCATAATATaagtatgtatgtttgtgaatTAATTTTGTTACtgtcaataaatatttttcGAAGTGTTTGTACAGTGAGCCTGAATGTTTTTACTGCTTAGTTATTGTAACTAGTGCTGTAGAAATGGACTGAAGTTCTGCCTCaaaggaaaaaagcataaacatCCTGAGTGCAAATTTTGGGGCCCTTTACTGTAATCAGCAGATTAGTTTCATTAATCAACAGTCACATGTCATCTGAGCTTCCTCCTCACTTGGCTACTAATGTGTCTGTTATGCCCTGTGATCTGAACTACTCCGACTTCACCCCCATTTATTCTGTCAACTCGCAGTGAAACACGTTAAGACATGTCTGATGCTGCTTTATTGCAAGTTGCAAGTCAAGGTTTTTATTGGTGTGGCAATTGTGAAGATAATTTTGGTTCTCCGATTTTGATTTTTATGTTTGATGAACTATCGGCCAAATGTGAACCTTAAAGTCTCCATCTGTCTTTTAATTCAGGCGGAGCTGTTTTCACAATGACCATATGAAAAgatcaggagtttctggctaaTTGTGAATCCAGTTTTTACTATTATTCAATGTGTGAAAATCATTTGGTGATTACTGTGAGCTGGTCTGGATCAAAATGACCTTACCCATGCACATCCATCACTCTAACCTCATTGCCCCACAGATGCCTCACTTTGCCTGCTGATGGGCATCTCCCAGACAAGTAATCACATTTCAGACTAACCTGAGACACAATTAGATTGGCTCCTTAGAGCTTCTCACTGACACATTCTGTACATGTAGGTTGATAGATTAAGGAGCACTTAGAGGGCTTGTGACTACATTTTTAATCAAAACATATATCAGACAGCAGTTATTTAGCTTAGTAGTGGAATGGATTAACATACCCACtaccttttttatatttaaacatttttattaatgtaaATACATATACATTACGTATAATTTTTCTGTAACATTTTCT

Function

GO: NA

KEGG:

id description
K02324 POLE; DNA polymerase epsilon subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83851 lncRNA downstream 102856 18539126 ~ 18540015 (-) True G62625
TU83857 lncRNA downstream 107590 18534933 ~ 18535281 (-) True G62630
TU83856 lncRNA downstream 120996 18521564 ~ 18521875 (-) True G62629
TU83803 lncRNA downstream 244925 18394836 ~ 18397946 (-) True G62586
TU83785 lncRNA downstream 285118 18355242 ~ 18357753 (-) True G62571
TU83955 lncRNA upstream 75079 18734908 ~ 18737388 (-) True mmab
TU83997 lncRNA upstream 87364 18747193 ~ 18748609 (-) True G62733
TU84039 lncRNA upstream 177145 18836974 ~ 18845777 (-) True G62771
TU84040 lncRNA upstream 245490 18905319 ~ 18906567 (-) True G62772
TU84129 lncRNA upstream 297428 18957257 ~ 18961477 (-) True G62817
XM_039802343.1 mRNA downstream 5830 18629967 ~ 18637041 (-) True pes
XM_039802341.1 mRNA downstream 14396 18622821 ~ 18628475 (-) True gal3st1a
XM_039802340.1 mRNA downstream 16418 18622821 ~ 18626453 (-) False gal3st1a
XM_039802338.1 mRNA downstream 21717 18613470 ~ 18621154 (-) False lztr1
XM_039802339.1 mRNA downstream 21717 18614457 ~ 18621154 (-) False lztr1
XM_039802887.1 mRNA upstream 25632 18685461 ~ 18692897 (-) True foxn4
XM_039802307.1 mRNA upstream 55592 18715421 ~ 18720543 (-) True kctd10
XM_039802314.1 mRNA upstream 75593 18735422 ~ 18737406 (-) False mmab
XM_039802313.1 mRNA upstream 75593 18735422 ~ 18737405 (-) False mmab
XM_039804257.1 mRNA upstream 187908 18847737 ~ 18861234 (-) True trpv4
TU83852 other downstream 130610 18510155 ~ 18512261 (-) True G62626
TU83834 other downstream 150481 18489872 ~ 18492390 (-) False zgc:158398
TU83818 other downstream 200046 18439909 ~ 18442825 (-) False iqcd
TU83799 other downstream 256602 18383005 ~ 18386269 (-) True G62582
TU83796 other downstream 262369 18377602 ~ 18380502 (-) True G62580
unassigned_transcript_263 other upstream 293071 18952900 ~ 18952972 (-) True trnak-uuu_12
unassigned_transcript_264 other upstream 293661 18953490 ~ 18953562 (-) True trnak-uuu_13
TU84214 other upstream 441412 19101241 ~ 19102450 (-) False ficd
TU84258 other upstream 519676 19179505 ~ 19200233 (-) True si:ch211-225b11.1
TU84427 other upstream 889632 19549461 ~ 19554894 (-) False LOC120560442

Expression Profile