RNA id: XM_039802396.1


Basic Information

Item Value
RNA id XM_039802396.1
length 2308
RNA type mRNA
GC content 0.50
exon number 10
gene id dph7
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4531968 ~ 4543886 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGATGACGTAATTACGTATTGAGTCGTCCAGTCGTGGCTGGCTCACGTGTGACTTtgttattaatgttttgtttctcTGGATATTCAGTATTAAACAAATGTAAGCTCAACTTTGGGCATTTAATTCACCCGTTGAATATCTGTTCACTATCTGAAGTGTCTAACTGTTGGCGCTGCAGTGACAGGTGGTCATGGCTTGGAAGTCGAGGACCCGTAATCTACAGGTGTTTGACACGGAGCTGAGTGCTGACACGGTGGAGTGGTGTCCTGTTGCATCGAACCACGATGTCCTGGCCTGCGGGACGTACCAGCTGCATAAAGGGGCAGAGGAAGAGGATGCCACCCCAAGGCGGACTGGTCGCTTGTACCTTTTTGAATTTCGGCGAGAGGGATCTATGATCCCTCCTCTCACTGAGCTACAGCGCATGGACACCGCGGCCATTTTAGATTTGAAATGGTGCCATGTGCCGGTGTCAGGGAGGGCAGTGCTGGGAATGGCAGCTGCCACCGGAGAGCTGCAGCTGTACACGCTGTCAGACAGTCAGGAAGGTGGCTGTAGTCTGCACTCGCTGTGCAGTTTGGAGGTGGGAGCAGAGCGGCTGGCTCTGTCGTTAGACTGGTCCACGGGGAGAATGGACAGCAGTGATGTGCGGGTGGTGTGCAGCGACTCTGCAGGCTGCATCAGTGTGCTGTCCCTGGCTGAAGGCGCTCTCACAGCTCTGTCACAGTGGAAAGCCCATGACTTTGAGGCCTGGATCTCAGCCTTCTCCTACTGGGACACACAGCTGGTTTACTCTGGTGGGGATGATTGCAAACTTAAAGGCTGGGACCTCAGGGTCGGCCCCTCCTGCCCCACGTTCACCAGTAAAAGGCACTCGATGGGTGTGTGCAGTATTCACAGCAACCCACATCGGGAACACATCCTGGCTACAGGCAGCTACGATGAGCAGGTTTTGCTGTGGGATGGCAGGAACATGCGGCAGCCTCTCAGCGAGAGTCCCGTGGGCGGTGGCGTGTGGAGGCTCAAGTGGCACCCGACTCACCAGCACCTGCTGCTGgcagccagcatgcacaatgaCTTCCACATCCTTCACTGCCAGCAGGCCCTGGAGGGCAGTGGAGGAGCGTGTCCGGTCGTAGCCTCCTATATCCTCCACAACTCCCTGGCGTACGGAGCCGACTGGTCCCAGCTGTCCCTGGAGGAGCCCGTTCCTTGCTCCCCCGTTGCTGCAGAACCAAAGGAAAGCCTCACAGAGAGCGGAGGACACCTGAGAATTCAGTACGAATCTCCCACTGCCAGCTTCGACACTTCCCTAGAAGATGATGCAGGACGATACATCCCAGAGGGCATTGCAGCGCCCTCTGTCAGTGGGGATAGAGGTCCAGGCCCTGCCCTCAACTCGAACGAGGACGCGTCTTCACTGTCCTGTCTGCTGGCAAGCTGCTCATTCTATGACCATATGCTCCATGTGTGGCGCTGGGACTGGACTCCAGATGAGGCTCAACAGGAATCAGAGCAATGTGGACCAGGCTGAGCACCGGCTACATTGACACTACAGAAATATCTTCTATCAAATTATACCATGCAGCGAAGTAAAGCAGAATGTACAGCCCAGCTATAACATTGGCATGATGTTATTCCATTCAGTGTCTTCACTATGCAGTCTCCACACTTTGGAATAACTTATCACAGAATATGCAATTAGGAAAATGGTATATTTTCGTAATGACACAGATTTTTATAAACTTGTATTTAAAGTGAAATTGCTTATAATCCTTTTAATGTACATCATGTAGCAGCAAGATCAAAACAACCATTCACCCAGATACCTTTCCttttattgtagctttttttcAGCACTTTGTGATCGTGTTGAAGATGATTGTTCACAAAAACACCATGCTTAAAGAATAGCAACAATTGTGTTACTGTAGGTACCCATGCAGTATGTGTGAATGTATCTGATCACTTACTCTAAGGGAAATTCTCTTCATTTCTAGCCCTCAGCCTTCTAAGGACATTGTGCTCCTGGATTCAGTTAAGCATAAGGATATTTTTGGCAGGGTTGATGCTTGATGACTTGTGATTTTAGCCCAGATTAGCTGGTTGAAGGCAGGTATTAAAGTTCTGCTGTAGTGAACTTTCTCTAGATAACCCCTTTTTGCATTTGTATATGATAATGCCAGCATCTGGGCTGCTCCACAAAAATTTGGGGTGGTAATCTTTACCATATGAGGATTTTGGAAACTTTACCACAAATGTATATTCATGACACTTTCTGACCAATAAAGTTCAATTGACAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79528 lncRNA downstream 70897 4454690 ~ 4461071 (-) True G59207
TU79515 lncRNA downstream 117987 4413759 ~ 4413981 (-) True G59197
TU79437 lncRNA downstream 320131 4209756 ~ 4211837 (-) False golph3a
TU79397 lncRNA downstream 344496 4187261 ~ 4187472 (-) True G59101
TU79394 lncRNA downstream 348051 4183353 ~ 4183917 (-) True G59098
XR_005639407.1 lncRNA upstream 4866 4548725 ~ 4557613 (-) True LOC120560046
TU79595 lncRNA upstream 81179 4625038 ~ 4625307 (-) True G59241
TU79627 lncRNA upstream 92049 4635908 ~ 4704273 (-) True G59268
TU79649 lncRNA upstream 188771 4732630 ~ 4842143 (-) True G59287
TU79654 lncRNA upstream 194190 4738049 ~ 4741131 (-) True G59290
XM_039802392.1 mRNA downstream 2222 4477275 ~ 4529746 (-) True pnpla7b
XM_039802390.1 mRNA downstream 60488 4461429 ~ 4471480 (-) True LOC120560167
XM_039802794.1 mRNA downstream 96905 4433098 ~ 4435063 (-) True LOC120560375
XM_039802792.1 mRNA downstream 101878 4424149 ~ 4430090 (-) False sub1b
XM_039802039.1 mRNA upstream 95245 4639104 ~ 4642738 (-) True LOC120559971
XM_039803161.1 mRNA upstream 100745 4644604 ~ 4695210 (-) True si:ch211-158d24.2
XM_039804076.1 mRNA upstream 216257 4760116 ~ 4866975 (-) True galnt9
XM_039804077.1 mRNA upstream 216257 4760116 ~ 4781711 (-) False galnt9
XM_039804080.1 mRNA upstream 216257 4760116 ~ 4781568 (-) False galnt9
TU79521 other downstream 95652 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 96900 4432844 ~ 4435068 (-) False LOC120560375
TU79518 other downstream 96900 4433125 ~ 4435068 (-) False LOC120560375
TU79517 other downstream 101927 4424190 ~ 4430041 (-) False sub1b
TU79274 other downstream 842630 3688629 ~ 3689338 (-) True G58994
XR_005639605.1 other upstream 922364 5466223 ~ 5466437 (-) True LOC120561493
XR_005639606.1 other upstream 1047723 5591582 ~ 5591708 (-) False LOC120561494
TU79960 other upstream 1882347 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 1882347 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 1882391 6426250 ~ 6426786 (-) False G59521

Expression Profile