RNA id: XM_039802419.1


Basic Information

Item Value
RNA id XM_039802419.1
length 2441
RNA type mRNA
GC content 0.44
exon number 7
gene id kcnip3b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26197240 ~ 26245476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAATGTTGTTTTGCCGTTTTAGGGCATGCAAGATGAGAACACTTTGGTAtttcatgtactgtatttcaATAAGTCGTTTGTGTTTACCTGCACTTTCTCCCACCTAATGGGAGCAAAATCATGTAAATGGACATTGAATTCTTTGTTTTTCccaaaagacattttcatcTAAAACCAAGATGTGATTCATGAGTGTAAACTATGACGTGAGGACTGATAATAGCTGTTTGGATTAAGAGGGTGCGCAGTAACTTGTGTCTTTGCCATTCTGAGCTCCTGAGAGTGTGTGCTGGAGGAAAGTCTGGAAAGTGACTCTAAACGTCTCCTTTAATGCATCGTAATAAATGGCTAGTGACACAACCCCCATTTTCCCTCATGAGTCTAGAGAGAGAGGTTTTCCATATATGTCGGCTTCCACATATTTTCCACTTCAGCATCAGTGTTGACATTATAGAGCAGCCTTCGTCCAGCCTGCTGGCCTGGTTCTCATGCTGCCTCCTGTGCCTGGAAACAAACCCATGCAGTCGCCCAACAACAAGACTTGATTCCTGTCACTTCTTGGCTCACCTCTGTTGAAAACACTTGTTGTTGACTTGCCCAGCCCAGCGTTACTCGTATCGGCCCAGGCTTCCTTTCATCTCTCCCCAGGGCCAGGCCTTCTCGTGCAGGCTTGGCCCTGAGTGGGCTCCCCCTGGCCTGACATCATGGGGATCCAGGGCATGGAGCTGTTTGCCATCGGTGTGGTCATCATCCTTTTCATGGCAGTTCTCAAGCAGTTTGGCATCTTGGAGCCCATGTCCTCATTTGAAGaGAGCAGCGACAGTGACTTGGAGCTGTCAACGGTGCGTCACCAACCAGAGGGTCTGGATCAGCTGCAGGCTCAGACCAAGTTCACCAGGAAGGAACTTCAGTCCCTCTATCGAGGCTTCAAGAACGAGTGTCCCAGTGGGCTGGTTGATGAGGAGACATTCAAGACCATCTATTCTCAGTTCTTTCCCCAAGGAGATGCAACCACCTACGCTCACTTCCTGTTCAACGCATTTGACATCGACAGGAACGGTTCAATCCGCTTTGAGGACTTTGTCATCGGCCTGTCGGTGTTGCTCAGAGGTTCGGTCACTGAGAAGCTCAACTGGGCCTTCAACCTCTATGACATTAATAAGGACGGCTACATCACCAAAGAGGAGATGCTGGCGATTATGAAGTCAATCTACGACATGATGGGGAGGTACACCTACCCCTGTGTGAGAGATGAAGCGCCCTCTGAACACGTGGACAAGTTCTTCCAGAAAATGGATAAAAACCGAGATGGTGTAGTGACCATTGAAGAGTTCATTGAGACCTGTCAGAAGgaCGAGAACATCATGAACTCCATGCAGCTGTTTGAGAATGTGATATAAGAAAGCCCACCTGcacaactcacacacaaacatagtaaccccaaccctaacccagGAACTAGACGTTTTTTATTTCTCGCCACACTCCTTTAGCTGTATCTTGCAAACTGCTTCTGGATTAAAAAGGACTGCTACagacagaagaagagaagagtttCCTGGATAAAAATTCCCCCGTCTGTccggtgtgttttttgtgtcctAATTGAAGAAACACGAAAAGCTCCTTGTGTTTCTATCGTCGGACAAAAATAATCAACAACAACCAACAAGGAATGGAGAAGCTTACAATATTCCTCTGACCTGAGCACACAAGGATACAAGCTTTAACACTACACCtcacctctctcacacacactgtttctctttcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgttgttTCCTCAAGAGTTGTTAGAGCACTGGATGAGGTGAACTAAGAGAATAAATAttgcaaaagaaaaagagaaatgaaCTTAAGCATGTTTGTCATCAAATATGTGATGTGGAATAAGCTTGCACTACACTTTTATGACTGTATTATATGCGCCTGAAGTAAAGGCACTGTAGATACCTGCACCTGATACACCACtggtgtgtatgtatatatgtatagttAATAATTATATATCCCACCTTGTATTGGCCTCATCTGTGCTGCACTGGGTGAAGGAATAGGACCAGAACTGaatttttgttttagaaatcTCTGTTTAACATTATGTTTAGTAACAGTTCTTcacagattattaaaaaaaatctcctttttttgtattttggaaGATTATGCTTTGCTGGTCAGATTGGAAAATGGAGTCTGTACAGTACTGTGAAGAAGCAAAAGGACTGTCAAAAGTGTGTTCTTATGCTGAATTATGCTTTATCTTGGTTCTTCAGTATCTTCGAGCATGCTGACTCTAAGTCCCACAGtattatgtacagtacagtaagaCCTTTGTGATGTTGATTAATTAAAGATGCTCTCAGCTGCGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86587 lncRNA upstream 300620 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 301186 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 307390 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 311685 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 312302 25917187 ~ 25917476 (+) True G64657
TU86705 lncRNA downstream 58374 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 126158 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 248859 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 266989 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 286276 26531752 ~ 26533420 (+) True G64836
XM_039802637.1 mRNA upstream 45418 26181011 ~ 26184360 (+) True pcna
XM_039802633.1 mRNA upstream 49662 26174224 ~ 26180116 (+) True zgc:152830
XM_039802632.1 mRNA upstream 68170 25980908 ~ 26161608 (+) False gpat2
XM_039802631.1 mRNA upstream 68170 25980909 ~ 26161608 (+) True gpat2
XM_039802762.1 mRNA upstream 265291 25958799 ~ 25964487 (+) False adra2b
XM_039802420.1 mRNA downstream 3651 26249127 ~ 26291466 (+) True slc23a2
XM_039802421.1 mRNA downstream 3651 26249127 ~ 26291466 (+) False slc23a2
XM_039802423.1 mRNA downstream 3652 26249128 ~ 26291466 (+) False slc23a2
XM_039802422.1 mRNA downstream 3652 26249128 ~ 26291466 (+) False slc23a2
XM_039804116.1 mRNA downstream 50275 26295751 ~ 26307628 (+) True LOC120561147
TU86550 other upstream 314249 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 533208 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1395147 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1395158 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2536487 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 167393 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 248859 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 248859 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 248859 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 368761 26614237 ~ 26642481 (+) False cltcl1

Expression Profile