RNA id: XM_039802421.1


Basic Information

Item Value
RNA id XM_039802421.1
length 3633
RNA type mRNA
GC content 0.48
exon number 16
gene id slc23a2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26249127 ~ 26291466 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGTACGAACGTCAACCCCTTCGTGGCTTTATGAAAGGCGAAATCCTTCCATGAGCGGAGCAGCTGTTTAAAACCCCGTTTGTTGCAGACGAGTAGCTCGCCTCGGAAGAACCGGGCTAGAACACGGTCTTGTCTCTTCACCCCAGTCAGTTCGGCTTGGGTTATCCTCCAGCTTCAAGTGTAACGTTAGGCTATCTGTATCCCCCCTTCCTCGTGTGCGCACACCGCTTCAAAACACAAACCACGGGGGCGAGCCAACGGACGTAACGTTAGCCGAGAAGGGAAGTGGATCCGTCTTCTCTTTCATCAGACAGATGCTCCCAGCCGCACAGCTTGACAGGAGTGATGGGATGTGTCAACTAGACGAGGCAGCCCTAGACGATGTAAGTGGACTGAAGGATTCATCTGCAGTGTTCACGTTGGAGCGAGGCAGAGGtggaacagaggaagaggaggaggaagacacAAGAATGGGTGTGGGGAAGAATACTACCTCCAAGTCAATGGACAGCAGCAGTGAAGGTGGAATATTTGAAGAGGAGATCAAGCATGGCGAAGATTTCTACCCTATTCCGGTGGTGGTAAACGGCTTGGGCGGTGCCAGTGGAGACCAGGATACTGAAAACACAGAGCTGATGGCCATCTACACTAAAGATCAGGGAGCAGAAAAGaGCTCAATGTCTGAGACGTTGGACAGCACCGATAGTATGGACGCAAGGAGGATGGACATGATCTATACAATTGAAGACACCCCACCCTGgtacctgtgtgtgttcttgGGCTTACAGCACTACTTGACGTGTTTCAGTGGCACTATTGCTGTGCCATTCCTCCTCACTGAGGCAATGTGCGTCGGTTTCGATCAGTGGGCCACCAGTCAGCTCATTGGGACCATCTTCTTCTGTGTGGGGATCACCACCCTTCTACAGACCACACTGGGCTGCAGATTGCCTTTGTTCCAGGCCAGCGCTTTTGCCTTCCTTGCACCAGCTAGAGCCATCCTGTCACTGGACAAATGGAAGTGTAATACCACAGAGGTTCCAGTATTCAACAGCACAGAGCTCCTCAACACAGAGCACATCTGGCACCCCAGGATACGAGAGATCCAAGGGGCTATCATCGTGTCGTCCCTGGTCGAGGTATGTATCGGAGCACTGGGTCTGCCCGGGATCCTGCTGAAGTACATCGGACCTCTGACCATCACTCCCACCGTAACCCTTATCGGCCTGTCTGGTTTCCAGGCTGCGGGAGAGAGGGCTGGAAAACACTGGGGTATTGCTATGTTGACTATCTTCTTGGTGCTGCTCTTCTCTCAATATGCCAGAAACGTTCACTTCCCTCTCCCGGTCTACAAAGCCAAGAAAGGCTGGACTTCCTACAGGCTGCAGATCTTCAAAATGTTTCCTATAATCATGGCCATCCTGGTGTCATGGCTGCTgtgtttcattttcactgtgacTGACGTTTTCCCGCCGGAGGTAGGCAAGTATGGCTACTACGCCCGCACAGACGCACGTCAAGGAATCCTTGCAGCTGCACCGTGGTTTAAGATCCCATATCCCTTCCAGTGGGGCTTTCCTACTGTAACAGCTGCAGGTGTGATCGGCATGATGAGTGCAGTGGTGGCCAGCATCATCGAATCGATTGGAGATTACTACGCCTGTGCGCGACTCTCTTGTGCTCCTCCACCTCCCATCCACGCCATTAATAGGGGGATATTTGTAGAGGGTATTTCCTGTGTGCTGGATGGGCTTTTCGGGACAGGAAATGGCTCCACCTCCTCCAGTCCAAATATAGGCGTCCTGGGAATTACAAAGGTGGGCAGCAGACGTGTTATTCAGTATGGAGCCGCCATGATGCTGCTGTTGGGGCTGGTGGGTAAATTCAGTGCCCTGTTTGCCTCTCTGCCTGACCCTGTCCTGGGAGCTCTGTTCTGCACCCTGTTTGGCATGATCACAGCGGTGGGACTCTCCAACCTGCAGTTTGTTGACCTCAACTCCTCCAGGAACCTCTTTGTTTTGGGTTTCTCCATCTTCTTCGGTCTGATGCTGCCGAGCTACCTTAAACAGAACCCGCTGGTCACCGGCATAGTTGGGATTGACCAAGTGTTGAATGTGCTCCTCACCACTGCCATGTTTGTCGGAGGCTGTGTCGCCTTCATTTTAGACAATACTATCCCAGGCACCCCTGAAGAACGAGGCATCGGGAAGCTGAAACGAGGCGTTGGCCTCAGTGCAGCAGAACTGGAAGGGATGAGATCGTATGATCTGCCGTTTGGAATGGACGTTATCCGCAAATACCCCATCTTCAAGTACATCCCTATCAGCCCCACCTTCCAAGGCTACCAGTGGGGGAGAATACGGGAAGCCTGCAAGAGCAGAAAAGGACATGGGGATGCGGTGAAGGGGGGAGGAGTGGGAGCGGAGGGAGGCACAGCACTGGGGGAGAGTCGTGTATAGCAAACGGGCTGATGCAGCAAAATCTTAAATGTTGCTGCAATGTGGGGAACAAGGTATGGTACACTAAAAGGATGGGAGAGTGGAGGACAGAAGCGGTGGATGATTCGGGATTGTGTGGAAGAAAATGGGATGCACCAACCCCCTCGTCAGTATGCGTTTTCTTTAGCTTGTGTCAGTCTTTTCCCACTTCCCACTATGCTATTTTAGGCATGCTATAGCAAGTCAAAGCATGCTATAAAAGATGTTGCCATGCAGAGGTTAGTTGGTGTGTGTCCATGTGGGTATGCAACAAGAGAATTAACAGGTTTGTGCAAACATTTATTTGCACTTTAATCCAGGAAGAGACAGATGGACATTAAACTATCGAAGATGACTGCCCAATTCCATAAAACATATTCTGCATAGTAGATTTGATTTTGTCAATTGAGGATTATGCAAATTCTGTTAGAATAACTTTCCTCTAAACTCATTATGCAACCACATTAGAGACACACGCATGCTCACACACCAACAGCCTTACCAAAACTAGCTTGAGCGCTACAATGCACGTCTGGATCATGCAGATTGATGGACGTGGTTTGTCAGGTTCCCTTACACATGCAAAGTGATTGTGaaattttatttttgcactACCTACTGAGTTCAAAGCAGAATGTCATTCTGCAGTTCGCACCCCCATTTCTTCAGTAAAACTCCACAGAGACCAGTTTAGAAGCACATCACATCCACTCATCTCACGCTAAAGAAACTCACATCCCCCATTTTTCCTTGTTTCCATGTAGTAGAGTGCTAATATTCACACGTTCTCAAATTTAACCCAGTTTACATGTCTTTAATGTGTCAGTATTATGCATCAGTTACTAACAAGACTTTTCCTAAACACACCCTTGTCTCATTTGGCAGTCAAATGGAACTTGACTTGTTTTACTTAATTATGGAACTagattaaagtttaaaaaaaaatttaaatttgctTATTTTACTTACgttttatttttacttattttactCCTGACACACGAAGGCACTTCCAAAAATGAAACAGCTTTAATTAATAATACTTGATGTTGACAGCAGTGCATCTGCAAAAGCCACATTAATGGCACACAGTAACCGTACATAGTACATAAATACTAAAACAAAGGAGAATAAAATTGTCTTCATCCTGTGAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86587 lncRNA upstream 319969 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 320535 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 326739 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 331034 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 331651 25917187 ~ 25917476 (+) True G64657
TU86705 lncRNA downstream 12384 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 80168 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 202869 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 220999 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 240286 26531752 ~ 26533420 (+) True G64836
XM_039802416.1 mRNA upstream 3651 26197240 ~ 26245476 (+) False kcnip3b
XM_039802417.1 mRNA upstream 3651 26197240 ~ 26245476 (+) False kcnip3b
XM_039802418.1 mRNA upstream 3651 26229778 ~ 26245476 (+) True kcnip3b
XM_039802419.1 mRNA upstream 3651 26229778 ~ 26245476 (+) False kcnip3b
XM_039802637.1 mRNA upstream 64767 26181011 ~ 26184360 (+) True pcna
XM_039804116.1 mRNA downstream 4285 26295751 ~ 26307628 (+) True LOC120561147
XM_039803671.1 mRNA downstream 33283 26324749 ~ 26328928 (+) True sprn2
XM_039803583.1 mRNA downstream 67654 26359120 ~ 26381494 (+) True nsd3
XM_039803585.1 mRNA downstream 67654 26359120 ~ 26381494 (+) False nsd3
XM_039803586.1 mRNA downstream 67654 26359120 ~ 26381494 (+) False nsd3
TU86550 other upstream 333598 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 552557 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1414496 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1414507 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2555836 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 121403 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 202869 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 202869 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 202869 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 322771 26614237 ~ 26642481 (+) False cltcl1

Expression Profile