RNA id: XM_039802533.1


Basic Information

Item Value
RNA id XM_039802533.1
length 2003
RNA type mRNA
GC content 0.44
exon number 13
gene id mfsd10
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28873642 ~ 28879999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCGGTGTGATCTGTTCTGATTTCTTTAACCTACGAGTCTGCGGATGTAGTGTATATATTCAGTGTCCAAGAAGAGGTGATGCTGATAATGAGTAGCCTACTCTGCGGAGGGAACTAGCTAACTTGAACAGAAGAGACACATTATTCAGTCTCAGGAATGTCAGCTGTAAACAAATCTGCAGAGGATGGCAGCACCTTCTCATCGAAGGTCATCAACATTGTGTTTATCACGCTGCTGTTGGACCTGCTCGGATTTACACTGATTCTACCTCTACTGCCTTCGATTTTGGACCATTATGCACAAACAgggGATGGCGTATACCAGTCTCTGCAGAGTGTCGTAGACTGGTTCAGGGAGGCCGTGGGGATTCCGATGGAAAAGAAATACAACAGTGTTCTGTTTGGaggTCTGATCGGGTCGCTGTTTTCTCTGCTGCAGTTCCTGTCGTCACCTGTAACTGGGGCTCTGTCAGACCACTATGGCAGGCGGCCCTTGCTCATTCTTACCACATTAGGGCTGATGTCCTCCTATGCGGTCTGGGCTGTTTCCCAGAGTTTCAGCATGTTCCTTTTGTTTCGAGTAATTGGGGGCATTTGTAAGGGCAACGTCAGCCTCTGCACTGCTGTCATGGCAGACTTGCCTTGCCCGAAAGCACGGAACAGAGGAATGGCTATGATCGGCATTGCCTTCTCCCTGGGCTTCACCGTGGGACCTTTGATGGGTGCCTATTTTGCCCTCAGCTCCAGAACAACAGGAAATGTCTTCTACCAAACTCCAGCTCTGCTCGCCTTGGCCTTCAGTGCTGCTGATCTGCTCTTTATTTGGGTCATGCTGCCAGAGACACTCACAAAGGATGTCAAGGCTTCATCTTCAGAGTTTGGGGACTCCAGGGACCTTTTGAACCCAATATCTTTGTTCCATTTTTCAGCTCTTACCAGGACAAAAGATCCACCTCCAAAAGAAAGAATGCAGAAGCTTCGAGCGTTGGGCTTGGTTTATTTCTGCTATCTCTTCCTGTTCTCTGGTCTGGAGTTCACGCTGAGTTTTCTGACTCATCAACGCTTCCACTTTACAAGTATGCAGCAGGGAAAGATGTTCTTCTTCATTGGTGTCATCATGGCTTCAATCCAGGGGGGTTATGCTCGCAGAATCAAACCTGGTCAGCATATCAGGGCTGTTCAAGTGgcaaTAATATTATTAATCCCAGCATTTATTCTCATCGGGCTCTCATGGAATATAACAATGCTTTACATTGGCTTGGCGTTATATTCATTTGCAGCTGCAATAGTAGTTCCATGCCTGTCAACGcttgtttctgaccatgGGTCAGTCAATCAGAAGGGCACAGTGATGGGGATACTGCGTAGTTTGGGCGCTCTTGCCAGAGCACTGGGACCAGTTTTGTCATCCTCTGTTTACTGGATAGCTGGAGCTCAGATCTGTTTTCTCCTCACATCAGCCTCTTTCATTATTCCTCTGGCTCTCCTGAGAACAGCCAAGAGGCTAAAGGAGGAGTGAGTGACACAAAGTCTTGACAGAGACTCTTGATTGCAGAGACATTTAAGAGTTCAAATGActgttatgatttttttttttacatctgctGGGAGAACAAGCACTGCCATCTTACtttgacacaaacaaaaataatgagATGTATACTGTCTGCGCTGTTTACCAAGGATCACAAATTCATTGAACAAAATAATGCAAGAAGATGATGTACAAGGCAAAACCAAGGTACGTTACAGTACAAATAGGAAATGAGGGGACATGCCTTTAATGTGCACATGTAGACCTGCGCATAGTGTGAAATGTATGGGTTAGGGTGggttacaaataaaatgtatgcttgtgaattatatatatatcgttTTATAATGCAGTATTCTATCAAGAACTCAGAGTTTCTATTGTACAAAGTAGCATTTTATTTTAGCTAACTTTGAAAATGTGGATATTCTATTTtcttgttaaaaaaagaataaacgaGTAAGTCAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87569 lncRNA upstream 26527 28845626 ~ 28847247 (+) True mboat4
TU87556 lncRNA upstream 57374 28816185 ~ 28816400 (+) True G65418
TU87555 lncRNA upstream 58298 28815254 ~ 28815476 (+) True G65417
TU87533 lncRNA upstream 107549 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 117581 28755865 ~ 28756193 (+) True G65394
TU87618 lncRNA downstream 105614 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 192942 29072941 ~ 29131216 (+) True LOC120560778
TU87732 lncRNA downstream 198427 29078426 ~ 29098313 (+) True G65565
TU87739 lncRNA downstream 223989 29103988 ~ 29105609 (+) True G65570
TU87928 lncRNA downstream 667450 29547449 ~ 29614880 (+) True G65710
XM_039802531.1 mRNA upstream 425 28860511 ~ 28873349 (+) True LOC120560259
XM_039804022.1 mRNA upstream 24303 28847095 ~ 28849471 (+) False mboat4
XM_039803242.1 mRNA upstream 60778 28807353 ~ 28812996 (+) True zgc:114041
XM_039803241.1 mRNA upstream 73092 28774899 ~ 28800682 (+) True jak2b
XM_039803645.1 mRNA upstream 451731 28117914 ~ 28422043 (+) True si:dkey-215k6.1
XM_039802534.1 mRNA downstream 1032 28881031 ~ 28890870 (+) True LOC120560261
XM_039802535.1 mRNA downstream 1033 28881032 ~ 28890870 (+) False LOC120560261
XM_039803180.1 mRNA downstream 22757 28902756 ~ 28916610 (+) True malt1
XM_039803181.1 mRNA downstream 22757 28902756 ~ 28916610 (+) False malt1
XM_039803182.1 mRNA downstream 22944 28902943 ~ 28916610 (+) False malt1
TU87117 other upstream 1572004 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2215805 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2231293 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2377446 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 470125 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1306849 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1366888 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1367940 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1367984 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile