RNA id: TCONS_00074560


Basic Information

Item Value
RNA id TCONS_00074560
length 1910
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_037999
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34484454 ~ 34509997 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCGCGTGTGTTCGCCACTCTCGCGATATAAACTTTTCCCGGTTACCTGAGGAGACGAGAGTTTGGTTCAAAGTGTACCCCTATTGgaatgaacaaaaacaaacaaaaatcttcTTTATAACTGCAGaaaatcTTGTCTGCATGAAGAAAACCAGAAATGGCATCACCACAAACACTTCAACCTGTCCTGAAAATGAAGGTCGACGAGCTCTTCCTCTTTTGGTTGAGTGAGCCGAGTACTCAGGCGATGCTAAAAGACTACCTCAACAAAATCAAGAGTGGAGAAGAAATAGATCTAAGCCATGGTGAATTCAAGGGCACAAGCACTTTGATGTTCActgaaaacaacaataacaatatagcATCAAAGATTAATGCAACGGAGAGGATGAGTGCGGCCCTTGGTGCCCCGTGCAGTCCTCCTTCGGCCACGCTGCCATCTGCGACTGGCAGCAATAACAGGGCAGGAGTGAATGCGAGGGCCCTGCGACGCTCTGTCAGCACTAAAAAGCAGGCGCAGGCCAAGAAAGAGGAGCCCGTTACACCAGCCTTAAGTGAAAGCATTCCAAAGTTCTACTTCCCTCGAGGACAGCCTCAGGCCAACATCAACATAGACAATCTCATTTCCaagattgaaaaaatattttctcaatttccTGATGAAAGAGTCACTATTAAAGACATGGGGCTGGTCGCCAAGGCCTGCGATTGCCCATTCTATTGGAAAGCTCCATTGTTTCATGCTGCTGGAGGAGACAGGAGGGGATATGTGTCTGTTCACAAGTTTGTGGCAATGTGGAGAAAAGTGCTTCAGACCTGTCATGATGACGCATCCAAATTTCTTCACCTCCTGGCCAAGCCTGGCTGCAATTATTTGGAACAAGAAGACTTTATTCCATTCCTGCAGGATGTGGTGGATTCCCATACAGGCCTGGCGTTTTTAAAGGAGGCTTCAGACTTTCATTCACGCTACATTACCACTGTTGTCCAGAGAATATTTTACAATGTGAACCGCTCGTGGACTGGAAAAATAACATGTTCAGAACTCAGAAGAAGTACTTTTCTGCAGAATGTGGCACTTCTTGAAGAGGATGAAGAGATTAACCAGTTGACAGAGTTCTTCTCCTATGAACATTTCTATGTCATCTACTGTAAATTCTGGGAGCTGGATACAGATCACGACCTGTACATTGACCAGAGAGACCTAATGCGGCATAATGATCAAGCCATTTCCCACAGAATGATTGAGAGAATATTCTCGGGAGCTGTAACCAGGGGCCGAGCAGTTCATAAAGAGGGCAGGCTGAGCTACGGTGACTTTGTGTGGTTCCTCATATCTGAGGAGGACAAAAAGACTGAGACGAGCATAGAGTACTGGTTTCGCTGTATGGATCTGGATGGAGATGGAGTTCTTTCCATGTATGAGCTGCAGTACTTTTACCAGGAACAGTGTCAGAAACTTGAGGCCATGGCCATTGAACCATTGCCTTTCGAGGACTGCCTGTGCCAGATGTTAGATCTGGTTAAGCCAGAAAACCCagGAAAGATCACACTCAGGGACTTAAAGAGGTGCAGGATGTCCCATATTTTCTTCGACACGTTCTTCAACATTGAGAAGTATCTAGACCATGAACAGAGGGATCCCTTATTGGCTGCAAGGGATGCTGAGGCAGTGGGCCAGGAGATTTCGGACTGGGAGAGATATGCTGCAGAGGAGTATGACAACTTAGTGGCTGAAGAAACCGCAAATGAGCAATACCATGATGGGTACGACAATATTTTAGACCCGGCGGATCACGTGACGAGTGCATTAGAGCTGCACAGTGAGAAGAGACATCTGTTCGGGATCCCCAGCCCTCACTGCAACCTGGATCTGGATGAATATGAATACGAGGACGATTTCGAATGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-268 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Orthologous to human PPP2R3B (protein phosphatase 2 regulatory subunit B''beta).

Ensembl:

ensembl_id ENSDART00000169114

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075408 lncRNA downstream 129498 34350517 ~ 34355550 (-) True XLOC_037996
TCONS_00074554 lncRNA downstream 156546 34326430 ~ 34328502 (-) False XLOC_037995
TCONS_00074556 lncRNA downstream 156592 34326690 ~ 34328456 (-) True XLOC_037995
TCONS_00074555 lncRNA downstream 156933 34326666 ~ 34328115 (-) False XLOC_037995
TCONS_00075407 lncRNA downstream 401831 34076831 ~ 34083217 (-) True XLOC_037988
TCONS_00075002 lncRNA upstream 36669 34546666 ~ 34547855 (-) False XLOC_038000
TCONS_00075409 lncRNA upstream 37524 34547521 ~ 34587531 (-) False XLOC_038000
TCONS_00075411 lncRNA upstream 37524 34547521 ~ 34587807 (-) False XLOC_038000
TCONS_00075410 lncRNA upstream 37524 34547521 ~ 34587807 (-) False XLOC_038000
TCONS_00075412 lncRNA upstream 66512 34576509 ~ 34587807 (-) False XLOC_038000
TCONS_00074558 mRNA downstream 88784 34389976 ~ 34396264 (-) True XLOC_037998
TCONS_00074557 mRNA downstream 116206 34356895 ~ 34368842 (-) True XLOC_037997
TCONS_00074553 mRNA downstream 176935 34307140 ~ 34308113 (-) True XLOC_037994
TCONS_00074551 mRNA downstream 184341 34274501 ~ 34300707 (-) False XLOC_037993
TCONS_00074566 mRNA upstream 326071 34836068 ~ 34842414 (-) True XLOC_038003
TCONS_00074568 mRNA upstream 356579 34866576 ~ 34871900 (-) True XLOC_038005
TCONS_00074569 mRNA upstream 362736 34872733 ~ 34882516 (-) False XLOC_038006
TCONS_00074571 mRNA upstream 374936 34884933 ~ 34885902 (-) True XLOC_038007
TCONS_00074572 mRNA upstream 392974 34902971 ~ 34915394 (-) False XLOC_038008
TCONS_00074544 other downstream 563477 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 564024 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 700541 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074530 other downstream 1045483 33438962 ~ 33439565 (-) True XLOC_037978
TCONS_00074528 other downstream 1102582 33381249 ~ 33382466 (-) False XLOC_037978
TCONS_00074564 other upstream 243047 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074567 other upstream 338863 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074593 other upstream 1191658 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 1608963 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 2250892 36760889 ~ 36761294 (-) True XLOC_038023

Expression Profile

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