RNA id: XM_039802569.1


Basic Information

Item Value
RNA id XM_039802569.1
length 1868
RNA type mRNA
GC content 0.50
exon number 16
gene id hnrnpk
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21627012 ~ 21641536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTGATTTGCCTTCTGTTCAACCAATCGGCACACTTTAGCTAAACTGGTGCATTTCCATGTTCGgtagagaaggaaggaagggggaAGAGCGAGGTGTTGCACTGCAGGTCGCAGCAGCTGTTTGGTCCTTGATTATTTAGTTCCGCCTATCAACACGCCCTTGTCCCTGTAATAAATATTGACTTCCACAGCTCACAGGGGCCAGTTTTCTGCTTCTctctccctgctgctgctgccaacTGTTCCCCGGACCGAGGTGCCCACCCCACCTCTTTCGCTGTCAAAAGACCATGGAGACAGAAATTGAACAGCAAGAAGATACTTCATTCGGCAACACAGAGACTAACGGTAAGCGCCCTGCTGAGGATGCAGATGAGCAGAAATCATTCAAGCGCTCCAGGAACTCAGACGAGATGGTTGAGCTTCGCATCCTCCTGCAGAGCAAAAATGCAGGAGCTGTAATTGGGAAAGGTGGCAAAAACATCAAAGCCCTTCGTACAGACTACAATGCCAGTGTGTCAGTCCCAGACAGCAGTGGGCCTGAGCGCATCCTGAGCATCAGTGCCGACATCGAGACAGTTGGAGAAATCCTGCTGAAGATTATCCCAACACTGGAAGAGTACCAGCAGTACAATGGCGTGGATTTTGACTGTGAGCTACGCCTGCTGATCCACCAGAGTCTGGCTGGCTCAATCATTGGAGTGAAGGGAGCCAAGATCAAGGAACTGAGAGAGaaCACAAAGACCAGCATTAAGCTGTTTCAGGAGTGTTGTCCTCAGTCGACAGACCGAGTGGTGCTGGTTGGCGGTAAAACGGAGAGGGTGGTGGAGTGTATCAAGACTATGCTGGAGCTCATTGCTGAAGCTCCCATAAAGGGCCGTGCACAGCCCTACGATCCGAACTTCTACGATGAAACGTATGAATACGGTGGTTTCACCGTGATGTTTGAAGAGAGGGGAGGCGGTCGCAGGCTTATGGGAGGGTTCCCCATGCGTGCGGGCAGGTCCAGTGGTGGAGACCGTGGGTTTGACCGAATGCCCTCTAGCAGAGGTGGACGGGGACCCATGCCTCCCGCCCGCCGGGAGTATGATGAGATGAGCCCCCGCCGAGGTCCTCCTCCACCCCACCCGAGTAGGGTTGGCAGGGGGAGTGGCCGTGGACGCAACATGCCCATGGGACACCCACATAGAGGAGGTGACCGAAGAGGCAGACCAGATCGCTATAGCGATAACATGagTGGAGGAGGATATGACAACAGTTCTTCCTGGGATAGCTACCAGTCAGGTGGACGTGGCTCCTATAATGACATGGGTGGCCCTGTCATCACCACACAAGTGACGATCCCTAAAGATCTGGCTGGCTCTATCATTGGTAAGGGAGGCCAGCGGATTAAACAGATCCGCCATGAGTCAGGAGCCTCCATCAAGATCGATGAGCCACTGGAAGGTTCTGAGGACCGAATAATTACGATTACTGGCACCCAGGATCAGATCCAGAACGCCCAGTACCTTCTACAGAACAGTGTGAAGCAGTACTCTGGTCATTTGCTGTAGACCCAGGAGACTCAGATTGAAGCAGACTCAGATtgacccctcccctcccccccttcccctccccTCAAACTTCCTGCCCCTGTCTAACTCATCCCCTTCAGACTATAAATCTGGATTAtgggtgtcttttttttaattttatttttgtattttttaatgaaatgtccAACATTCCTGTGcataaaagaaaatgtagatGTTCTGCATTTTTAATAGTGTAGTCTATAAGTTTATCAGTTAcactttccctttttttcatCTATCAAAATATTCAATCTCCTgagacaaaaataaacataaccttTATTTTTT

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639467.1 lncRNA upstream 6301 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA upstream 8410 21616223 ~ 21618602 (+) True G63641
TU85261 lncRNA upstream 139974 21486769 ~ 21487038 (+) True G63628
TU85260 lncRNA upstream 142346 21479780 ~ 21484666 (+) True G63627
TU85205 lncRNA upstream 279495 21346367 ~ 21347517 (+) True G63576
TU85373 lncRNA downstream 203296 21844832 ~ 21845138 (+) True G63714
TU85374 lncRNA downstream 233909 21875445 ~ 21875687 (+) True G63715
TU85491 lncRNA downstream 490348 22131884 ~ 22150124 (+) True G63792
TU85584 lncRNA downstream 1262499 22904035 ~ 22905966 (+) True G63872
TU85631 lncRNA downstream 1345645 22987181 ~ 22988040 (+) True G63914
XM_039803635.1 mRNA upstream 27723 21588876 ~ 21599289 (+) True LOC120560787
XM_039803638.1 mRNA upstream 27859 21588876 ~ 21599153 (+) False LOC120560787
XM_039803636.1 mRNA upstream 27978 21588876 ~ 21599034 (+) False LOC120560787
XM_039803637.1 mRNA upstream 28010 21588876 ~ 21599002 (+) False LOC120560787
XM_039802852.1 mRNA upstream 168665 21428343 ~ 21458347 (+) True agtpbp1
XM_039804561.1 mRNA downstream 1361 21642897 ~ 21649576 (+) True c6h9orf64
XM_039804530.1 mRNA downstream 8921 21650457 ~ 21660743 (+) True LOC120561417
XM_039804531.1 mRNA downstream 8921 21650457 ~ 21660743 (+) False LOC120561417
XM_039804532.1 mRNA downstream 8921 21650457 ~ 21660743 (+) False LOC120561417
XM_039802950.1 mRNA downstream 20167 21661703 ~ 21672091 (+) True gkap1
XR_005639510.1 other upstream 28213 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 949096 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 1138174 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 1138174 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 2178062 19434907 ~ 19448950 (+) False rasl10a
TU85622 other downstream 1288363 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2051126 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3182182 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3182183 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 4043436 25684972 ~ 25696570 (+) False LOC120561182

Expression Profile