RNA id: XM_039802570.1


Basic Information

Item Value
RNA id XM_039802570.1
length 6936
RNA type mRNA
GC content 0.44
exon number 18
gene id si:ch73-72b7.1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20849986 ~ 21049849 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGCGTAAACGGAGAGAGTGGAGAAGGAGAGAGCGCACGGAGAGAAAAGCAGAGCTTAGTGGCAAGGCAGCAGTGCCGCTGACACGAGTGAGGGACCCCGTGGCTATTTCCACCACCTCTCTCTTCTCACAGCTTAACCTGCGCCTTTTGAGACGGACTTCGACATCGGGACTATAGGCTATAGACCTTTTGGTTTTGGACTCGTTTGATTAATCAGCAGACCCTGAAGTGGAGAGGGGGTTCTTATTCCCCCACCGTGGACCgaggagttgtgtgtgtgtgtgtttatgtgttttacGCGTTGCTTGTAATGGGGAAAAGTGGACAGAGAAGTGGAATAGGACACGGGGGTTGCAGCTTGGTGAGGATGTGCGCCACGCCGGGGATCCTGCTTCTCATAGTGCTCGTACACCAAGGAGTCGCCCAAGtgagagatgatgatgatttcCTGAGTCTGAGTGAACTCCCGGAAACCTTCCCCTCCGACCCTCCGGAGCCCTTACCTCACTTCCTGTTTGAACCTGAGGAAGGCTACATTGTCAAGAATAAACCTGTCAATCTCTACTGCAAAGCAACGCCTGCCACGCAGATTTACTTCAAGTGCAACAGCGAGTGGGTCCATCAGAAAGACCACACTGTGGAGGAGAGGGTGGACGAAAACTCAGGTCTGGTCGTAAGAGAAGCCAGTATAGAAATCACACGGCAGCAGGTGGAGGAGCTGTTTGGTCCTGAAGATTACTGGTGTCAGTGCGTGGCCTGGAGCTCTGCTGGAACCACCAAAAGCCGCAAGGCGCACGTTCGCATTGCATACCTGAAGAAGTCATTTGAACAGGAACCCTTAGGAAAGGAAGTATCTCTGGAGCAGGAAGTGCTGTTACAGTGTCGCCCTCCAGAGGGCATACCAGCTGCTGAGgtggagTGGTTGAAGAACGAAGAGATAATTGACCCAGCAGAGGACAGAAACTTCTACATCACCATCGACCACAACCTGATCATCAAACAGGCGCGTCTGTCTGACACAGCCAACTACACATGTGTGGCTAAGAACATAGTGGCCAAAAGACGAAGCACTACAGCCACTGTTATTGTTTACGTGAATGGTGGTTGGTCGACTTGGACGGAGTGGTCGGTGTGTAACAGTCGCTGTGGACGGGGCTTCCAGAAACGAACCCGCAGCTGCACTAACCCCGCCCCTCTGAATGGAGGACTGCCTTGTGATGGACAGGCCATACAGAAACTACCCTGTACCACACTGTGCACCGTGGACGGTGTGTGGACAGAGTGGAGTAAGTGGTCGGCCTGTGGGACAGAGTGTacccagtggaggaggagggagtgcAACAACCCAGCACCTAAAAACGGAGGAAAGGACTGTGACGGGCTGGTACTCCAGTCTCAGAACTGTACCGACGGACTCTGTATGCAAAGTTCATTGTTTCAGATGTCCACTGAGCCCAAAGAAAAGAGTGATTTGGGAATCCCATCTGCTCCAAGTACAGATGATGTGGCGCTATACGTGGGCATTGTCATTGCAGTGATTATGTGCCTGGTCATCTCTGTCATCGTGGCGCTTTTTGTCTACCGCAAGACACACCGTGACTTTGACTCGGACATCATTGACACCTCGGCACTTAACGGAGGCTTCCAGTCTGTTAATATCAAAACAGCCAGATCAGCTGATCTGCTGACAGTTCCTCCTGATTTGACTAATGCAGCTGCCATGTATCGTGGTCCAGTGTACGCCCTCCACGATGTTTCAGATAAAATCCCGATGACCAACTCCCCTCTGCTGGACCCTCTTCCCAACTTGAAAATCAAAGTCTACAACTCTTCTGGTCTGGTCACGCCGCAGGACGACCTCGGAGGAGACTTCACAtccaaactgtctcctaagGTAACTCAGTCTCTGTTGGATAACAGCGACACCATGAACCTTCGCAACCAGAGCTTGGCTCGAACACGAGACCCTTCATGTACCGCTCACGGATCCTTTAACAACCAAGGAGGACACCTCATCGTACCCAACTCTGGTGTGAGTTTGTTGGTTCCAGCGGGTGCTGTTCCTCAGGGTAGGGTGTACGAGATGTATGTGACTGTGCACAGGAAGGACAGCTTGAGACCCCCGGTTGAGGACATCCAGACAGTGCTGAGTCCAGTGGTGAGCTGTGGACCTCCAGGAGCTCTGCTGACCAGACCAGTGATCCTCACCATCCACCACTGTGCTGACAACGTCCAAGAAGACTGGCTCATGCAGCTGAAGAACCAGCTGGCCATGGGAGAGTGGGAGGATGTGGTTGTAGTTGGAGAGGAAAACTTCACCACCCCCTGCTACGTGCAGATGGACTCGGAGGCATGTCACATCCTAACAGAGACACTGGGGACTTACTGCCTGGTGGGCCAGTCAATCTGCAAGGCAGCCGCCAAGAGGCTTAAACTGGCTGTTTTTGGACCCGTCTCCTGCACAACTTTGGACTATCACATCAGGGTCTATTGTCTGGATGACACACAGGATGCACTCAAGGAGGTTCTTCAGATGGAGACCCAGATGGGAGGGAAGCTTCTGGATGAGCCAAAGACCCTGAACTTTAAAGACAGCACACACAATCTGAGACTGTcaatccacgatgttccacacacacactggaagaGCAAACTCATCGCAAAGTATCAGGAGATCCCATTCTACCAGGTGTGGAGTGGCAGTCAGAGAACTCTTCACTGTACCTTTACCCTGGAGAGACTGAGCCCAGCCACCACAGATATCAGCTGCAAACTGTGTGTACGGCAGGTGGAAGGAGAAGGGCAGATCTTTCAGCTCAGCAACACATTGGAGGAGGAGGTTCAGTGCATAGACACGTCCCTGATGGACCCTGCCAGTAATATCACAACCTTAGTGGGACCCAATGCCTTCCGCATTCCTTTATCCATCAGACAGAAGCTGTGTGGCAGTCTAGATGCACCACAGACCAGAGGCAATGACTGGAGGATGCTGGCCCACAAACTCAACCTTGacagGTATCTGAACTACTTTGCCACCAAGTCTAGTCCGACAGGTGTGATCCTGGATCTCTGGGAGGCCCAGCACTTCCCCGATGGAGACCTAAATGAACTGGCCGCTGTGCTGGAAGAGATGGGTCGCCATGACGGTAACTTTGCCTCCATGACAACGGAACACTGACGAAGCAGTGTGGTTACCGTGACAGAACTCTGGAGACGATTACACTCAAATTTATTCTCGAAGGTGGATGCTGCGGCAAGGGCAATGAACAAATCAGATGTGAGCAAAAGAAAAGTTGTCGCCATGGTGATTGAGCACCGGTTAAATACCATGGCACTCATTCCGATATGGTAACAGACAAGAAATGCTCAAGCTAGTGCTGGAAACtatgtgtatctttgtgtgtttatttgagcAGTGTTGCAGTGTTGTGTGTGACTGAAGGAGACATAACCCAACCtacgacacaaacacagtccGTCAGgaacaaataaaacatacacacgcataaaaaaaaagaccttgTCTGGTGCAACACTAGGTGTTCTCTTGCTGTTACTTTATACTGaacaaagagaagcagagaaaagaggCAACAGAGGTACTGACCTTGAAAACCTCTATAAGAATGGAACAGAATCATAAAGGGAGAAAAGCTAAACTAATTACAAACGAGTGGGTGAAGGTAGAGTGAGGAAAAAGAGGGAGTGAGTCAGACACTGACTCTTTAGTAAGACAAGagtaaacacagagagaggctgAGCTGATTACAAAAGGGAGGGAGGACGTAAACATAAAATGATGGAAGAAGCCGCAGGTGATCATCTGTACGAACAGGATGGAAAACAGATAATGAGAGAGCGGAGATAAAGAAGTGATTCCTCACTTCTCTTGCAAGCCTTGGCTGTACGTGATTTGCCAGTACAGTTTGTTGTCTTTATATATCGTTTCCTAGGGAACGCTCTATGTATTCTGCTGTCCATATGTGTGGATCATTTCCCGCAAACAGAATTTGCTACACAGTGTGACTGTCAATCAAAGGGTCCTGACCAGAAACAAGCCCAACACTACAGGTTTCCCCTTTATGGCTGACATCATAAGTAATGTTTAAATTTTTGTTATATTGGAGTTTGTGACTTTCCTCCAAAATGCATGAAGATATTAAATCATGCAGGTCACAGGAAGTTTAGAAGTACCAAGTCAAAGGAAACTGTACTTCCTGTCCAGTTGCATTACATCTGTGCCTCTGATTTTCTTGAAAAAGGCTATCCAAAGATGATTACACTCCTGATGGATGAAAGTAAaaacttatttttattattttagcaGTGTGTGGTTGTGACAAACCTTTCTGTTTTGAGGTAAGATGGCACTTATTATAAACGGATAAACAGGGCAAAGATGCAAACTGTCAGCTATTCATTCTCATACACAgaatattttataatataaaatgtttgttttgataGCTTCATAATTTACTCATTTTAAAACTGCATATATATTTCTtcaggaaataaataaaaacatcaaaaacatttcTGTAACTGTTGGTTTCACCACGAGCATCAAAGCAAGGATGATCTTCAAGCTACAAATCCCTTAACTAAAATCAAGTGTTAACGTATTTTCTGCAGTGCTGCTACTTCATTCCACCCCAAAGAGCAGTTGTTTGGAAGCTGTAGTGCAGATAGATACTAGACGCAGGGTGGGGAATTCCAGCCTTGGCTAGCACATTTGGTTAACCACACCTCAATTCCAGGAGTCTCTCTGATGGACTGTTGGGGCTTGTTTCTGGACAGGGTCCAACTCAGAGAAAACCGAGAAGAAGCAAAAAATGATGAACTGAAAGTGAAAACATAAGtgtttttaaatacagtaaTCTACAAACTACCACACTATTATGTGTTACATCATGTGTATACAGCTAATATCATTCATCACCGCTAAATGTACACAATATACTGATTTTATCaatcatattttaatttactaaaatatatatactgtagcctatatatatatatatatatataaatatatatatttctgtcaTATTTTTGGTGTCTGATCATCACAGAATGAGAGTTCTGTTGTCTGCTGTCAGGCCACATTTCATTTGTGATCCCCACCATGACTTGGTCATGGTCACTAGCACCATCCAGTGGCTTTTGAGGAATAacagcatttacattttttgattgTCTGTAACTTGTAAATACATTATTATGTTCATTCTAATGACCTTTTTATTATCATAATGTTTCTGTTCTGTGTTCATTATTGTGTTATTTACATTAACATTGTTTaccattttaaagtttttacaAGTGTGAACTGTATGGGGGATAAAATCTGTAACATATCAGTTAGTTGCCCTAAAACAATGCTCTGTCAGCAACTAACATTCCAACTCATGGTGTATTTGTTGAAAAAGTTGCAATTTAGAGCTAAAAATCTAAATACCAACttaataggcctactgtatgtaaaatgaagtgtaatatatttgttttttagaaCAACATTGTTAAGCAGGGctgatttttaaatgaatgcatAGACTTGGGTGAACAGTGTCTGGCGAAAAGGTGAAACTCCAGCAAGCCAGCTTTGAGGGAAGAAAAACAGCCTTATTTTTAGTGGCTTTTAAATAGCTGTCAGATGCCACTGGGGACATAAACTCTATTCACCATGTAAAGACAACACAGTTCAAAGGGAATACATGTAAAATGCTCAAAAACTGGAGTCAAGCTTTTTCCGCTCTGAACTATGGAGAGACGCCATATGAAACCGAACATCAGGTATGTAGAGGAGATACTGAGGAGGGTATTGTGAAGAACACCAAGTAGGCAGGCTTAGTTAACACCAATACAAAAGGTTAGATCTTTACCTCCTCATGACAGATTTCATCTTGCATCAGTCCACACAGGAGGAAACCTTgagacattgattttacataTGGATTTTTTCAGAAATATGCAAGCTAAAAGTCTGGTCTTTTGTATTGGTGTAAAACCAGATGTAGAAGACAAAGGCCTCAAAATGATGATCTTTTAATTTTGGACAGCCTTATTAACCAAATTAGTAAAGGTGTATGGTTAAATGATGGAGAggatgttttgtatgttttcaaATGTAACTGCTGATGTCAGATGTGAGGAAATCAAAGGGAAGAGGTTTTGAGGATAAAAGCCTAAAACGTCAATTAAGTATGTTTCAGAACGAAACATGAACCCAAATGTCATGAAAATGTCTCTTTCATACAATGTAATGTGCTCATCAACATCTCTTATTAACTCAAATGCAGAATACAAGCTCAAATTGTATCTGTTAAGAAATGTTAGTTACCAGTTGGGTAACTTTACCCAAAATTTTATCCTTGCCATGTTCTGAGTCTACAGTTTACCAGCAGGATAGACTCTCATATGAGGAGAACAAACATAGGCCACCAGAAGGTGATCCTTCGTGATGTAAAACTGAAGAAAGTAGTGTTAAGATATCAAagtatgtaaaaaatattttgtatcaACGTGTACAGTTGTGTACTGTCAGCTATATTTGGCAaatttgagaaaataaaaaagagcagTACAGTTAGATACTAGTTTGTATgtttaaagtttttatttaagTTTCTTTCCTGTTTTGTGAAAGCAGTGTCTACTATGCAAACTTGGCATTGGTTATCATGATATAAGTCTATAACTAGAGCTGTGCTTGTAAgtgcattttaattttaatatcaggagtgatttgatttgattagtGCAGGGTAGTGTTGGTCCATATTTGCTAATTCTGGCACGCTTTATGAATCTTGCTCAATCTTGCTGAATGCTCGCCTCTCTATCTCCTCTAATTGTTTTCTGTACAAAGTGTAAGAAAGAATTTTTAAGacaattaataaattatatttataagcaatgctgaaaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85076 lncRNA upstream 188829 20660840 ~ 20661157 (+) True G63471
TU85070 lncRNA upstream 202489 20646192 ~ 20647497 (+) True G63468
TU85071 lncRNA upstream 202489 20646239 ~ 20647497 (+) False G63468
TU85067 lncRNA upstream 206714 20642917 ~ 20643272 (+) True G63465
TU85062 lncRNA upstream 208884 20640758 ~ 20641102 (+) True G63460
TU85120 lncRNA downstream 114967 21164816 ~ 21222651 (+) True G63511
TU85165 lncRNA downstream 262904 21312753 ~ 21314091 (+) True G63545
TU85205 lncRNA downstream 296518 21346367 ~ 21347517 (+) True G63576
TU85260 lncRNA downstream 429931 21479780 ~ 21484666 (+) True G63627
TU85261 lncRNA downstream 436920 21486769 ~ 21487038 (+) True G63628
XM_039803737.1 mRNA upstream 298167 20499130 ~ 20551819 (+) True stpg2
XM_039802894.1 mRNA upstream 359400 20473651 ~ 20490586 (+) False wdr31
XM_039803803.1 mRNA downstream 228553 21278402 ~ 21282508 (+) True LOC120560913
XM_039804144.1 mRNA downstream 343924 21393773 ~ 21403390 (+) True LOC120561163
XM_039803624.1 mRNA downstream 354114 21403963 ~ 21410730 (+) False golm1
XM_039803623.1 mRNA downstream 354115 21403964 ~ 21410730 (+) True golm1
XM_039802852.1 mRNA downstream 378494 21428343 ~ 21458347 (+) True agtpbp1
TU85087 other upstream 172070 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 361148 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 361148 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1401036 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 2168825 18661157 ~ 18681161 (+) False acacb
XR_005639510.1 other downstream 539027 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 1880050 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2642813 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3773869 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3773870 24823719 ~ 24834620 (+) False cdc14b

Expression Profile