RNA id: XM_039802582.1


Basic Information

Item Value
RNA id XM_039802582.1
length 4580
RNA type mRNA
GC content 0.45
exon number 14
gene id dgcr8
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5607031 ~ 5626385 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGTTAGTTTGCCGCTGTGGTTTTCTTCAAGATGGCGGGGCTGCAGTTGAAGCAGTATGGCGGCGCATGGAGAATAAAATAATTTAGAAAGGTAGTCATATGCCCGATAGGAGACAGCTGTTTCATATTTATCGCTCCCAGAAGAAACCAGTGGAGGATGATCAGTGCCTAGATCCCATATTAAGCTGAATGCATTGTGATTTCCAATAATTGAGACAGTGATTCTGAAAGCTGTCTAcattaatgaaaagaacaatGTAGTCAGCTTAGCATTTTCACCTCTGGTACGCGGTCTATACAGGGATGTGCTTCTGCATGCATTCTGGGTTTAGATAAGAAAGTCTCAACAGGTCAGATTTTAGAATAAACATATCGGTCTGTATAAGTTGTAATTCGTTATACAGAGGAAATGGAGATAGATGATGTGCTACCCCCTCTCCCCTTGGAGCCACCTGATGATTTTGGCCAAGATGAGGGCAGGGCACCTCCACCACCTCCCCTGCAAACGTCCAGTGACGCAGAGGTAATGGACGTTAGCTCTGGTGGTGATGGATACACATACACCCCAGGGGACGGGGAAGCCAACTCACAGCAGGCCCTCAGCAAGGGCTCGATAACTTTTTATAGCCACCTCTCAGATGAGGCCAGTGCCATCCCACCATGCCCTAGAACAGCCCGCCACGCGCCCCCAGTCACCGGGTTCCTACCAGACCTAAAGCTGCTTAGAGACGTTAAGATCAGCGTAAGCTTCACTGAAAGCAGCAATAGCAAAGACAGGAAGGTTTTGTACACAGGTGAGGGGCAGGAGGGAGGAAGTGATGACGGCTTAGACAGCGTAAATGGTGAGTTGCACGACTCGACTAGTGAGCAGGAAGTAGCCGAGGGTAGCTCTGGAGCAGGAAACCTAGCAGGCAGAAGATCAGAGGAGGCTGAGGTAGACTCGGAAAACAAGGTAGAGTTCGCCGTCCTGGATGAGTTGGATGACTTCTACGAGAACTTCCTGGATGACGACGACATGGAGCACGGTGGCTTTAAGTCTGATGTCATAGTTCAGCAGGAGCAAGCGGATGAGGAGGCCGTAGCTTTCTCCTATGGGGAGGAGTTTGACAATGACGTCGATGCTCTGCTGGAGGAGGGCATGCCAGTCCCAAAAAAGATGCGTCCCGCAGAGGACAAATTTGGCGGGGACAGTGATCATCAGTCAGATGGTGAAGGAGGTGTTCATCCCATGATGACCAAAATTAAGACTGTCCTGAAGAGTCGTGGGCGTCCACCCACTGAGCCTCTACCTGATGGATGGATCATGACATTCCATAACTCGGGCATTCCAGTCTACCTGCACAGAGAGACCAGGGTGGTTACCTGGTCCAGACCCTACTTCCTTGGGACGGGCAGTATAAGGAAACATGACCCTCCTACCAGCAGCATTCCTTGCCTACACTACAAGAAAATGAAGGATCTTGAGGAGAAGGAGCTGAATGGGGAGGCGACGCCTAATGACGTGGAGTCTCCTGTTAAGCCTGCCGACGAGGTCAATGGCGAACAGAGTGCAGGCAAGTCAGATGCTACAGCTGAGGAGCAGGACGGTGTCCCTCCCTCCAGTATGACTGACGGCGACCCAGATGTAGAGGCTACCACTAATAACAGCCTGCAGCTTAAAGCTCTCTGTGACATTGCCCACGGAGCCTTAGGACAAGTTAAGGCCAAGGTGGAGGTGTGCAAGGACGAGTCCATAGAACTTGAAGAGTTCCGTCTGTACCTGGAAAAATGCTTTGACTTTGAACAAGTCACAGTAAAAAAGTTTCGTACCTGGGCCGAGCGGAGGCAGTTCAACAGAGACATGAAGAGGAAGCAGGCCGAGTCGGAGAGACCCATCCTGCCTGCCAACCAGAAACTCATCACACTGTCGGTCCAAGATGCACCAACTAAGAAAGAATTTGTCATCAACCCTAACGGGAAGTCTGAAGTTTGCATCTTGCATGAATATATGCAGCGTGTCCTAAAGGTTCGACCTGTTTACAACTTTTTTGAATGTGAGAATCCAAGTGAACCCTTTGGAGCGTCAGTCGTTATAGATGGAGTAACGTACGGCACAGGAACCGCAAGCAGTAAAAAACTTGCTAAGAATAAAGCTGCTCGAGCCACACTGGAAATCCTCATCCCTGACTTTGTGAAGCAGACCTCAGAGGAGAAGCCTGTTGAGGGCGATGAACTGGAGTATTTTAATCATATCAATATAGAAGACTCAAGGGTGTATGAGCTGACCAACAAAGCAGGACTACTTTCGCCATATCAGATTCTTCATGAGTGCCTTAAAAGAAACCATGGAATGGGAGACACCAGCATTAAATTTGAGGTGATCCCTGGGAAAAACCAGAAGAGTGAATATGTGATGACGTGTGGGAAGCACACCGTGCGTGGCTGGTGCAAGAACAAGAGGGTTGGCAAACAACTAGCATCTCAGAAGATCTTGCAGATGCTTCATCCCCACGTCAAGAACTGGGGTTCACTGCTGCGCATGTATGGCAGAGACAGCAATAAGATGGTCAAGAAGGAGAGCTCTGACAAGAGTGTGATTGAGCTCCAGCAGTATGCCAAAAAGAACAAGCCAAACCTTCATATTTTGAACAAACTGCAAGAGGAAATGAGGAAACTAGCCACGCAGAGGGAGGAAACTAGGAAGAAGCCCAAGATGACCATAATGGAGTCAGCCCAGCCAGGGAGTGAACCCCTCTGCACTGTTGACGTTTAAGTCTCGAAATCACTGATGGAACCACAGCACTGAAACCcagtcactgtctctctctctctctctctctctctctcacacacacaatgcatcaCTGAGATCTAATGGCAATATAGTTCCACATTGACCTGGCCAGGTAGCTTGCTGCTTGCTTCCTTCGCCCATGTTGTATTGGTTCAGCTGGTAGATGTAAGGGTAGATCTAAATGCACTAACAGACAGTAGAGCAAATCTCGTCTACCTCTCTAGATGCATCCTCGCTATGCcactagaaaaataaaaaaaataaaatcacccAGGCTACAGAGAAGTTAATGTGACTTGATAACACATGAACCACATCAAAATAGAACTGCATGCTTGTTTTGATTGCGTGATTGTCGTTTTTAACAGTCGCAATAGTACCAGCACCtattagttttgtttgtgcttACAGTATTTGAAAGGGACTACTAATACTTGTGTATTTATACCACTTGTTTAATTAGGGAAACAAAGTTACTTGTTTATTGGGTATTGTGCTGGTCGGTGTTCTGGATATTTTGGCTGATGGATACAAaacatgcctttttttttttttttttttcctcagaatGGACAGTTGCTGTTATGGTTTGCACGATTTGAAAACATGTGTTGATGAAGTGATGACTATTCAGAACTATTGTTATGCACTTGTGTCCGGTCAGATATTTTTGTCAACTGATCATGTTGGTACAAGATTTTCTGCTTTTAGGATATTTGGGTTGACTTGCATTTGGAGGGAATTGTTGCCTTTTTTCCCCCCGTCTTTTGCTTTGGCAATACAAGTCTCATCCTACTTCCCATGCCAACACTGCAGTAAACCCAATCACCGAGTACTGTAATACCTTTAGAACAAATTATCATTTCTTTTATGCTCTATGTTCTTGCTAGCTTTTTATTAAAGTACTAATGTCATGCACACCAGCTAACCGTTTGGTACATTTCCGTAGCTTTTCCGTTTTGGTGCCCTTAAGAAATTACATTGGCTACGTGTTGCCTTAGTTCATCCATTTCTTGAAGGGCTCAGAGTATAAAAGTACAGTGGACCTAAAACACCCTTCAACAGGAAGAAGAAAGACCAAGTCCCCTTTACTTGATGAAGCATTTATTAAGCCAGTTAGTATTTTAATAAAGAACAGCTGTAAAACATCAGATACTTGAGGGAAAATGCCTCCAGCATGTGCCGATTTTTAAAGACTCAATCCTTAATGgattgtgtattttgtttgtcATTGTGATAAGTGATCATAGTTTGACCACAAGCagaatacatttttcaaaaggcAGCCTTGCCAAATTTAATAGGTACATTGACACATACAAAATGCAATCAAGTCATTTAGTTCAACACAAGCTGATGAAAGTGTGTATACCAAAGCTTACATCCAGTCTTATGCATTTTATAGAATTAATGTTGCTGCAAACTACAGAAGAAACATCGGACACGGGAAAATACCGACTACTTACTTGCTGGAACAAAAATAGAAACTGCTGTGCATTTTTTGTCAAAGTATTTGGCCTGTGGTTTTTCTACAACATATTCAAGGACACATTGCAGTTTAAACACAAGGCTGTTGTCATATTATAGATTGCTTTAAGAATGTGCTTTTCCCCCCCCCCGTGCATTTGTCTTGCCAAGTGTGTCtgtgagaaggaaaaaaaacaaaatactgctTTGACGTGTTGCTGTTGAGCTGTACCAATGAGTGGTTTTGAGATGTTGCTGCCTAGAAAATTATGTATTGCAACCTGAGCTCTATGACTTCAGTGGTATTTGTtatgcaaaataaaatgtcttgACTAATGA

Function

GO: NA

KEGG:

id description
K18419 DCGR8; microprocessor complex subunit DGCR8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79804 lncRNA downstream 15221 5589573 ~ 5591810 (-) True LOC120561494
TU79783 lncRNA downstream 91667 5467335 ~ 5515364 (-) True G59388
TU79766 lncRNA downstream 153136 5435419 ~ 5453895 (-) True G59373
TU79693 lncRNA downstream 601368 5004966 ~ 5005663 (-) False G59314
XR_005639428.1 lncRNA upstream 2731 5629116 ~ 5633186 (-) True LOC120560122
TU79818 lncRNA upstream 2738 5629123 ~ 5630066 (-) False LOC120560122
TU79871 lncRNA upstream 4365 5630750 ~ 5631797 (-) True G59437
TU79874 lncRNA upstream 15930 5642315 ~ 5642551 (-) True G59440
TU79875 lncRNA upstream 16231 5642616 ~ 5642842 (-) True G59441
XM_039802585.1 mRNA downstream 12127 5590574 ~ 5594904 (-) True ranbp1
XM_039802586.1 mRNA downstream 12136 5590574 ~ 5594895 (-) False ranbp1
XM_039802580.1 mRNA downstream 108135 5488756 ~ 5498896 (-) False pgam5
XM_039802579.1 mRNA downstream 108135 5488756 ~ 5498896 (-) False pgam5
XM_039802577.1 mRNA downstream 108136 5488756 ~ 5498895 (-) False pgam5
XM_039804097.1 mRNA upstream 16819 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA upstream 16819 5643204 ~ 5667209 (-) True tango2
XM_039802025.1 mRNA upstream 422578 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA upstream 422578 6048963 ~ 6061861 (-) False tbx1
XM_039803522.1 mRNA upstream 1268817 6895202 ~ 6941736 (-) True hk2
XR_005639606.1 other downstream 15323 5591582 ~ 5591708 (-) False LOC120561494
XR_005639605.1 other downstream 140594 5466223 ~ 5466437 (-) True LOC120561493
TU79521 other downstream 1170715 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 1171963 4432844 ~ 4435068 (-) False LOC120560375
TU79518 other downstream 1171963 4433125 ~ 4435068 (-) False LOC120560375
TU79960 other upstream 799821 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 799821 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 799865 6426250 ~ 6426786 (-) False G59521
TU79961 other upstream 799865 6426250 ~ 6426811 (-) False G59521
TU80011 other upstream 896374 6522759 ~ 6523674 (-) True G59563

Expression Profile