RNA id: XM_039802585.1


Basic Information

Item Value
RNA id XM_039802585.1
length 840
RNA type mRNA
GC content 0.47
exon number 6
gene id ranbp1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5590574 ~ 5594904 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGCGCGGGCATACGTAGGAAATTCGGCGCGCGAAAGCTGTAGCAGGAAGTGAGAGCAGCCGAGGGTAACGGCGGCCAGTCTGGGTTTTGAATCTATCCAACTACTTCCATAATCTACAAACATCTACATTAATATGGCAGACCCGAAGGACCAGGAAGAGCCTGAAACCACTGCAGATAATGCAGAGGATTCTAATCATGATCCCCACTTTGAGCCCATCGTGTCCCTTCCTGAGCAAGATGTGAAAACATTagaagaggatgaggaggaactctttaaaatGCGGGCTAAACTATATCGTTTTGCCTCTGAGAATGATCCACCAgagtggaaggagagaggaacagGTGATGTCAAGCTGCTGAAACACAAAGAGAAGGGCACAATCCGCCTTTTGATGAGGAGAGACCGCACCTTGAAGATTTGTGCCAATCATCACATTATGCCTAGCATGGAGCTGAAGCCCAACGCCGGCAGTGACAGGGCATGGGTGTGGAACACACTAGCAGATTATGCTGACGAAAGCCCTAAACCTGAACTCCTGGCGATACGCTTTTTAAATGCAGAAAATGCTCAGAAGTTCAAGGGAAAGTTTGACGAGTGCAAGGAGGAGGTCAAAAAAAGTCTTGATGGAACAGGCAACACTGATAGCGCAAACAAAGTGGCAGCAAAGCTGGAGGAACTCTCTGTAAAGGACAAGGCATCAGAAGAAAAAGAGGTCAAAAAGGAGACTGAGGTGAAAGAAGATGAGAAAAAAGAGGTGAAGGCTGAGGAGAAGAATTGAGAACCAAGAACTTGCTTTGCTGATCTTCAATATATCagtgtttcctctttttct

Function

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG:

id description
K15306 RANBP1; Ran-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79783 lncRNA downstream 75210 5467335 ~ 5515364 (-) True G59388
TU79766 lncRNA downstream 136679 5435419 ~ 5453895 (-) True G59373
TU79692 lncRNA downstream 584911 5004966 ~ 5005663 (-) False G59314
XR_005639428.1 lncRNA upstream 34212 5629116 ~ 5633186 (-) True LOC120560122
TU79818 lncRNA upstream 34219 5629123 ~ 5630066 (-) False LOC120560122
TU79871 lncRNA upstream 35846 5630750 ~ 5631797 (-) True G59437
TU79874 lncRNA upstream 47411 5642315 ~ 5642551 (-) True G59440
TU79875 lncRNA upstream 47712 5642616 ~ 5642842 (-) True G59441
XM_039802580.1 mRNA downstream 91678 5488756 ~ 5498896 (-) False pgam5
XM_039802579.1 mRNA downstream 91678 5488756 ~ 5498896 (-) False pgam5
XM_039802577.1 mRNA downstream 91679 5488756 ~ 5498895 (-) False pgam5
XM_039802576.1 mRNA downstream 91679 5488756 ~ 5498895 (-) True pgam5
XM_039804217.1 mRNA downstream 145110 5421621 ~ 5445464 (-) False si:dkey-112e17.1
XM_039802582.1 mRNA upstream 12127 5607031 ~ 5626385 (-) True dgcr8
XM_039804097.1 mRNA upstream 48300 5643204 ~ 5667209 (-) False tango2
XM_039804096.1 mRNA upstream 48300 5643204 ~ 5667209 (-) True tango2
XM_039802025.1 mRNA upstream 454059 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA upstream 454059 6048963 ~ 6061861 (-) False tbx1
XR_005639605.1 other downstream 124137 5466223 ~ 5466437 (-) True LOC120561493
TU79521 other downstream 1154258 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 1155506 4432844 ~ 4435068 (-) False LOC120560375
TU79518 other downstream 1155506 4433125 ~ 4435068 (-) False LOC120560375
TU79517 other downstream 1160533 4424190 ~ 4430041 (-) False sub1b
TU79960 other upstream 831302 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 831302 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 831346 6426250 ~ 6426786 (-) False G59521
TU79961 other upstream 831346 6426250 ~ 6426811 (-) False G59521
TU80011 other upstream 927855 6522759 ~ 6523674 (-) True G59563

Expression Profile