RNA id: TCONS_00075409



Basic Information


Item Value
RNA id TCONS_00075409
length 1504
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id XLOC_038000
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34546666 ~ 34587807 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTTACAGCGAGATATTGTTGACGTTAGCCGTACGGACGTCGAGTAATGTAACGTTCAATTTAGCAAGCCCTTAAAGTATAAAGATTTTACTTCACAAATCGTGTTGCAACAGCCTAACGTTACATGTTCCAAGTGATTCATCCTCTTACATGGACAAAGTGATTGTTAGTGGAAAAATTGTATTAGAAACCATTTGTTCCAAGTCCAGAGTTGCTGTAAGGGTTGTTTGATGGAACCGAACGTGGAGAAGAGACACTTAACACAGCAGATATCACATGATATCCCTCTGCGTCTAAAAGACATCAAACCACTAACTATCTCTGGCACCCCATAGACAGGCTATATTGACTGTTGCTGGTTTTAACTGAAAATCTGCCAatggatgggttgtggctggaagggcatccgctgcgtaaaactggaTAACATAtactggacaagttggcggttcattccactgtggcgacctcagattaatgaagggacaaagacgaaaaggaaatgaatgaatgaatatcatggAATAAATTAACTGCTGTCACAAACGGCTCAGGCGTACTTGGTTGTGTTTGCGACATAACTAAGCAGGCTGTAAACACAGCATAAACAATGTTTGGAAATGGGAAAGAACAAACACAGTAAACGGCATGATGACGAACAGCTCATGGTTTGCTTGTTGCCCTGCTAGGTCAcacaattttgtttctttttagccTTTTTTACCAGCCTTAATGCTAGTTTACAGCCAAAGGGTAATAACTTCAGAATAGGGCGTTCTTTCCATGCAAGTATGAATCTCAACTAGCCAGGGCCCAAGTCCATTGCAGCGTATACTGAATCCTAATGGTCGGCTAAGAAAGCCTGACAGCAATACTTGACATGGGCATTAAATCATTGCCCCAAGGAATCCTCCATCCTGCACCTCCTGACAGGAACACTGTCATCTCTGCCAGGGCATTTCCTATGCCTCTTGACAACACTGGATCTGAATTAGTCATTGCATTAGATGTAAATTGGTGCTGTTCAAGGATAATAATGAGCACCAAGATACATGTCGGTGTCACTGACATGACGCCATTTTGATACTGTCTCCCACCGGTTTATTATGTCTAATGGTATTCAGGCCGCGGCTGGCCGGAaagtttattttcagtttatgcacttgtatttttgtgtttgtttggacACTTCTCGGCACAAAGTGTCCATAGCGGAGCTCTTCTCAGAGGGTCAGTCTGGCAGTGTTTATCCAGCTGTCTGCATGATGGCTGACGGCTTCCCACTTGACATGGTTTGGCATTAAGGCTGACTAGCCAACAAGTCCGACTGCATGGGCAGCTCGGTGCCACAAACTGGCATCACTACCACTGCGAGGTGAGACCAGAGACTATAGCTTTTGGCACAGGATTGTTCACCACGCACATATGATTGCAGCCATAACATAGCTGGCTTATGTTGAAGCCTGACCTATCAATCGTGTGCAGACACGTATATAATAACAAGA

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00074562 lncRNA downstream 55347 34491057 ~ 34492174 (-) True XLOC_037999
TCONS_00075408 lncRNA downstream 191971 34350517 ~ 34355550 (-) True XLOC_037996
TCONS_00074554 lncRNA downstream 219019 34326430 ~ 34328502 (-) False XLOC_037995
TCONS_00075414 lncRNA upstream 4495 34592026 ~ 34812882 (-) False XLOC_038001
TCONS_00075415 lncRNA upstream 41190 34628721 ~ 34635018 (-) False XLOC_038001
TCONS_00075416 lncRNA upstream 41190 34628721 ~ 34812882 (-) False XLOC_038001
TCONS_00074563 lncRNA upstream 114411 34701942 ~ 34812883 (-) False XLOC_038001
TCONS_00075417 lncRNA upstream 125248 34712779 ~ 34812882 (-) False XLOC_038001
TCONS_00074560 mRNA downstream 37524 34485048 ~ 34509997 (-) False XLOC_037999
TCONS_00074559 mRNA downstream 39841 34484454 ~ 34507680 (-) False XLOC_037999
TCONS_00074561 mRNA downstream 47324 34488163 ~ 34500197 (-) False XLOC_037999
TCONS_00074558 mRNA downstream 151257 34389976 ~ 34396264 (-) True XLOC_037998
TCONS_00074557 mRNA downstream 178679 34356895 ~ 34368842 (-) True XLOC_037997
TCONS_00074566 mRNA upstream 248537 34836068 ~ 34842414 (-) True XLOC_038003
TCONS_00074568 mRNA upstream 279045 34866576 ~ 34871900 (-) True XLOC_038005
TCONS_00074569 mRNA upstream 285202 34872733 ~ 34882516 (-) False XLOC_038006
TCONS_00074571 mRNA upstream 297402 34884933 ~ 34885902 (-) True XLOC_038007
TCONS_00074572 mRNA upstream 315440 34902971 ~ 34915394 (-) False XLOC_038008
TCONS_00074544 other downstream 625950 33921464 ~ 33921571 (-) False XLOC_037985
TCONS_00074543 other downstream 626497 33920932 ~ 33921024 (-) True XLOC_037984
TCONS_00074537 other downstream 763014 33783555 ~ 33784507 (-) False XLOC_037982
TCONS_00074530 other downstream 1107956 33438962 ~ 33439565 (-) True XLOC_037978
TCONS_00074528 other downstream 1165055 33381249 ~ 33382466 (-) False XLOC_037978
TCONS_00074564 other upstream 165513 34753044 ~ 34753159 (-) True XLOC_038002
TCONS_00074567 other upstream 261329 34848860 ~ 34851804 (-) True XLOC_038004
TCONS_00074593 other upstream 1114124 35701655 ~ 35701772 (-) True XLOC_038017
TCONS_00074595 other upstream 1531429 36118960 ~ 36120526 (-) True XLOC_038020
TCONS_00074596 other upstream 2173358 36760889 ~ 36761294 (-) True XLOC_038023

Expression Profile


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