RNA id: XM_039802600.1


Basic Information

Item Value
RNA id XM_039802600.1
length 6229
RNA type mRNA
GC content 0.50
exon number 19
gene id arvcfb
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5668275 ~ 5962072 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGACGCAGCCGAGTAGAGGATGGCTGCCTGCGTCTGAGCTGCTGCCTCTGCGCTCACAGAGGGGAAAAGTCAACGTAAATAGACAAGGAAAGCGTGAGGAGacgagaggaggagaggagggaaaggAGAAGTTTTCCGATACCAGGAAATAGTTGTCGCACGTTTCCCCGGgaggtttttattttcttcGGGAACGAAGGGGGGGATTTTGGACCATGCCTGCTGAAGTGAAACAGgaacagaAAGTGGACACTATAAAAATGGCACGTCAGACACCCTGAAAAAATCTTCCAAAGGAGCAGAGCCCCAGCAACGCCACAACCCTGGCTATGATGCAGGAGCCGcaggaggtggtggaggagaCGGTCACCATAGAGGAGGACCCCGGCACCCCCACCTCCCACGTCTCTGTGGTCACCTCTGATGACGGCACCACACGGCGCACAGAAACCAAGgATATCTCATCTAACGTGAAGGTGACTAAGATGGTGAAGACGGTGACCACGCGGACAGTGCGCCAGGTGCCCCTGGGCCCCGATGGCTTGCCCCTGCCCGAGGGCTCGTCTCCACTAGGCAACTACACCGACTCCATTGACCGGCGCTACATGAAGAATGGAGGCTTCATCACGCCTCAAGCAACCTCCACCCTGACGCGCTCCTACAACAACTCCTACAACGATTCATACGGCGAGACCCCCGAGAGCCAGTACGTCCGCCACTACGGCCTGCACGATGGCTACGCCGATTTGACGGACAACTACGGCAGCCTGTCACGTGGCGTCAACTTCCGGCCACCGCGCTACCCCTACCTGCCCAACAGCTACCGGCCGGAGAACAGCTACACGCTGCCTATTCGTAAGGATGACTACGGCCATGTGGCCCAGCCCCAGGTGCCTATGGGTAACAGCACTGTGGATCTGAACCGCTCGCAGCCCGAGCGCTTCCAGCCCGAGCCATATGGCCTGGAGGATGATCGCCGCAGCTTGGGCCCTGAAGAGGAGGAGCCGTACGAGCTGGAGCCCGACTACTCCACCGCAAACCGCCGCACCCTGCAGGGGGCCAACCGGGGTCGCACCCACCGGGAACCTCTTCGTGATGTGCCCCGAGTCAGAGGGTACCCAGACGAAGCCATCGAGGCAGAGCTGATCGATGAGCGCCACCCCTACATCCATGGCATGTATTCAGCGCCGCTGGCCCAGCCCGAGAGGGGGAGCATGGCCAGTCTGGACCGCATGGGCGGCCGGCGCTCGCCGTCCATCGACAGCATCCGCAAAGACCCGCGCTGGCGTGACCCAGACCTCCCCGAGGTGATCGCCATGCTGGGCCACCCCATTGACCCGGTCAAGTCCAACGCCGCCGCCTACCTGCAGCACCTGTGCTACGAAAATGACAAGATTAAGAAGGATGTGCGTCAGCTGAAGGGCATTCCTGTTCTGGTGGGGCTTCTGGACCACCCCAAATCCGAAGTCCACCGCAAGGCTTGCGGCGCCCTGCGCAACATCTCCTACGGCAAGGACAACGACAACAAGGTGGCCATCAAGAACTGTGACGGCATCCCGGCCCTCGTGCGCCTGCTGAGGAAGACCAATGACATGGAGGTTCGAGAGCTCATCACCGGAACCTTGTGGAACCTGTCGTCCTACGAACCCCTGAAGATGGTGATCATCAACCACGGCCTGCAGACCCTGACCAACGAGGTCATCATCCCCCACTCGGGGTGGGAGCACGAGCCAAACGAGGACTCTAAGCCCCGCGACGCCGAGTGGACCACCGTCTTCAAGAACACCTCCGGCTGCCTCAGaaATGTGAGCTCAGACGGGGCAGAGGCTCGCCGCAGACTGAGGGAATGCGAGGGATTGGTGGACGCCCTGCTGCACGCGCTCCAATCAGCTGTAGGGAAGAAAGACATGGACAATAAGTCTGTGGAGAACTGTGTTTGTATTATGAGGAACCTGTCCTACCACGTCCACAAAGAGGTGCCAGGGGCCGAAAAGTTCCAGGACCCCTCGGCGCTGCAGGCACCTGGCTCGGCAGGACcacagaggaagaaaaaggaCGACGCCGGCTGCTTCGGAGGCAAGAAGGCCAAAGAGGAATGGTTTAATCAAGGCAGGAAAAACGGTGACAACGACAAAAACTACGACACATTGGATCTGCCCAAGCGCTCCGAGCCGACAAAAGGCTTTGAGCTGCTGTATCAGCCAGAAGTGGTGAGGCTCTACCTATCTCTGCTGACTGAGAGCCAGAACTACAACACCCTGGAGGCCGCTGCCGGGGCTCTGCAAAACCTCAGCGCTGGACAGTGGACCTGGTCCAACTACATCCGAGCCACGGTGCGTAAGGAGAAAGGTCTTCCCATCCTGGTGGAGCTGCTGCGCTCCGACTCGGACAAGGTGGTCCGAGCTGTGTCCATCGCCCTGCGCAACCTGTCCATCGACCGCCGCAACAAGGACCTGATCGGAAGTTATGCCATGCGGGACTTGGTGAGCAACCTGCCCAGCGGTCAACAGCGGCCAGCCAAAAACCTGGAGGAGGACACTGTGGTGGCCATCCTCAACACCATCCACGAGATTGTCACAGACAGCTCTGAAAACGCCCGCTCTCTCGCCCAGGCTCAGGCCATTGAGAAGCTGGTCGCCATCAACAGGACCAGCCAATCAGCTCGCGAAACCAAGGCGGCATCCCACGTGCTGCAGACGGTCTGGAGTTATAAGGAGCTGAGGAACGCGTTGACCAAGGACGGCTGGAACAAAAGCCACTTCCAGcccacagtgacagcCACCCCTAAAGCAACCAAGAACGGCAAGCCAGGCTACGACGACACCACTCTACCCCTGATGGAGAAGAACCAGGATGGTTACTCCACCATTGACCAGAAGGACAAGGACTGCAAATACAAGACAGTGGACAGCTCAGTGGACCAGACAGAACGGGAGCCATTAAAGAATGACACAAATAGGAAACACTATATCAGGAGTAACAGGCCTGCGGTCAGTCTGGTGGACGCTTGTGATGTTAAGCCCCAGCCTGTTGACTCCTGGGTCTAAATGCATGCATGGCTTAAAGTAACACCATCCCAGCTAGAGGACGACCTCTCATATCACCACTGCCATTTCATACGGAGCTCATCTTTGGAGTTGGACTTTGTACAGAAAAGaggattttaaaaataaataaaaataaagatcaCGGCAGCAACTACCCAGCAGCAGCCAACATTCTCATGCTTTTcagaagaagaacaaaaaaaaaggaagaaaaaaaaaactactcctGCTACTTTTTCATAACTACATTCCCACTGGACATCATGTGAATTTTTACAGTGTTGACTCTTGTTGAGCTCTACCGGTTCCCCGAAGCGGACCGAGGCCGGTGCTGGTGAAGGAATGGAGGACGTATGGAGGGCGATCAGATGCGAGGGGAAGGAAGGTAATAGAAGAAAGGAACGTGTTGGAAGGAAAGCTGTgggaaaagagatgcaaaatgaaTGTTTTTCATTTCCGTTTTCACATCTGGAAGAAGTTCATGCCtgaactttgtgtttttttggtttttttttgagAATTTGACTTACAGTTTGTTGTCGAGCTTTGGTATTTTGATGTGAAACAGGTATGGACCGGTGTGTTAAGAGGGTCACGGAACGTTTGTTTTCAGATTGGTGGGATGGACACAAGAAAgtaaaaagagagaaggagagaaagcgAGCCCAGGAGGAGCTGTAGCATTGTGGGTAAACATGGACACTCAGCAGTCTGCTCTCATAGACGTATATTTGGTTCACTGTGTTTTATttcgagagagagaaaaaatgcaCTGAGATGCTTTGAAATCAAAAGTGGTGAACAAGGAATTGAGACTAAAGTGAGGGGTCTGCACGTTGTGGTCTGGAGAAGGGAAAGTGACATAGTGTGTACATCGGACGGAGTAACGCTCTGTGTTCACGCCGCATCGCAAAAGCAAGCTGAAACGGAAACAGCCGTTTCATCGTGGTCAACGTGTTGACCCTCACTCACAGAGCTGTGGTTACTAGGGTAACCACTTAGGTTGTGTAAGCGACGCAGTTTGGCGAGTTTCCTGGCTGATTGCTCTTCGTCAGTGATGTGTATTAAAGAGGATTTACGGCATTTTGTTTATAAatgatgtgtttgtttttttaaaagagagGTGTAAGATTGTTCTCTTGTTGAAGGGATAGAtctaaaagcattttttttggggggttatataaatgtatattggggtcaaaaaggaaaaagaaaatggtaaaatgaagtagaaaaacatacataaaaatgaCCGACTTAGTTGTATATTAATATCACATTGTTTGGAAAGCACATTTCATTTGATAAAGGATCACCACGTTTGTAAACACGAAATAACCATGTAACTTAAATGTGTGTCGGACGTTGTCGAGTTACGCGGCGATCAcctatttatattttgtatttgtcacagcaacaacaacaacaaaaaagttccAGAAACAAAGTTTATCTGCAGTGTTCTTTCTAAAGGCGATGAAGTACCTACACGGTGTGGGACGGCCCCTGCATCTCCGAAACCAGACACTCTggacgggggggggggtcaaaggtcagacagAGATTTGATGGGATAGACCAGAGACGGCAGTGTTTAATAAGAAGAGTTCCttcgtttttcttcttctcgaTGCATTCAGAACCCGAGTTACCGCCAAAACCCTGATCCCTCCTTCTCCGGTGGTGCGTTTTTAAAGAGAAATATTCAGTCAGTGAGCATGAAGAAAAACTGTACAGATGTTTATATTCTATTCTTTCCAAGTGCCAGTTTTTGTGGTGTCATTTGGATAGTAACTAATTCATTCATGTGCAAGGTGAGAGTACAGGGAGGACGAGTGGATGTGGATGTACAAGGCCAAAATAATAGAATTGCATCACACtgtacaaaactaaaaacaTCATGTTTGGTCATATAGTATATATTTTTACAACGCTTTAGGGGGTGGGGGGCAGTTGAGATAAAGAAAAGCAGATAAGAGATACAGAATCATATTACTACTTTCTCTTGCTCGGTGAGACTGCACACTCAACCCAGTGAGAATGGGTCCGGTCTCCTTTTTCCAGCCCCAGTCGGTCAGGGAGGCAGAAAGAGAATCCAATCCGAGTCGGTATCACTTGTGCGTCATCAAGGCGAATGGCATGTGCCTGCATCGAAGTccgatttgtttttttctttgtggcGTATGTGACTTTATAAAGCTTGCATATTTTACACAGTGTTTACAAAGATGTATGTTGTGGTAAAAATCAATAaactacacacaaaaaaaaaacaacttactgtataaattttaattttcagaagttaaaaaaaaaaaaaaaaaaaaaaaagttataacaaTACCCAGAATCCCTTTTGTGTGTCCTCAGAAGTGTGTGATTTCATTGGACGATACTGAACCCTTGCAACAAAGACCCATACGACTGTCTATTCCTGGCTGCACGTGGCAGTACCACAACCAAAGGATCTGGAGGTGTATTTACATGCATTCAaaagtgtgtgggggggggtggatgtACAGCGTGTTGTACATTTACAAACGAAAGAGCCAAGCAAACTGTGCTGTAAATGAAATGCAGGACACGGACATGCATCGAATCAAACAAGCCTACCTGTGTAGATAGAACTGATTCAAGACCGTCAAAATAAAGTAACTGTACTACTCAGTAGCAGATGTGTTTGTACCTATCATGTGCCTTAACCTTTTCCATGCTAGATAAAAGATAAGTGTGTTTTATATAACTCTATTCCTTCCTTTCAACTGGCATCTCTTCATTCTGTCTGTTCACCTCTCCCCCTTCACCTCCTGTGtcaccctccctctctttttcctccactcaaatcactcattcattcattcatcctgCACTCCCTCCCTAACCCCACCCCACCCTTCCCAAAACCCTAAGTAGTGTAGACTGTTGGTGGGTTTCTGCCTTGTATTACATTGTATTATAACCTTTTAAAAAGATAGTCATTCAAAATAAGGGTTTTGATTTCCTAGAAGTTGTTAATGCTTTCGTAGCGAGCAGAAGCGATGCCACAGTGACAGAATGTATCATATTAATTTTACTAATACCCAGAGGCAAATATTACGCTTGTTAAACATAACGGAAAAATACTGGTTTGTAGAGTATAAATTTGGTGTGTTTTCAATAAATCATGCCTGGAAAGAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79745 lncRNA upstream 203829 5609331 ~ 5614090 (+) True G59354
TU79744 lncRNA upstream 222977 5590570 ~ 5594942 (+) True G59353
TU79739 lncRNA upstream 229019 5588590 ~ 5588900 (+) True G59350
TU79718 lncRNA upstream 436455 5381193 ~ 5381464 (+) True G59336
TU79667 lncRNA upstream 462217 5351240 ~ 5355702 (+) False fbrsl1
TU79862 lncRNA downstream 1341 5963413 ~ 5963662 (+) True G59433
TU79863 lncRNA downstream 2398 5964470 ~ 5964835 (+) True G59434
TU79908 lncRNA downstream 41540 6003612 ~ 6003870 (+) True G59471
TU79937 lncRNA downstream 190244 6152316 ~ 6152581 (+) True G59499
TU79940 lncRNA downstream 230006 6192078 ~ 6192278 (+) True G59502
XM_039802583.1 mRNA upstream 210890 5595566 ~ 5607029 (+) True trmt2a
XM_039802584.1 mRNA upstream 210890 5595649 ~ 5607029 (+) False trmt2a
XM_039802581.1 mRNA upstream 231542 5503729 ~ 5586377 (+) True zdhhc8b
XM_039802575.1 mRNA upstream 329219 5469438 ~ 5488700 (+) False ankle2
XM_039803939.1 mRNA downstream 4738 5966810 ~ 5995404 (+) True txnrd2.2
XM_039804197.1 mRNA downstream 48446 6010518 ~ 6041664 (+) True gnb1l
XM_039804198.1 mRNA downstream 52449 6014521 ~ 6041664 (+) False gnb1l
XM_039803237.1 mRNA downstream 536041 6498113 ~ 6627092 (+) True sema4c
XM_039803238.1 mRNA downstream 536041 6498113 ~ 6627092 (+) False sema4c
TU79733 other upstream 320165 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 364425 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 364425 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 466788 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 1286754 4530110 ~ 4531165 (+) False mrpl41
TU79987 other downstream 712845 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 1007061 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 1638021 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 1663735 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1722573 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile