RNA id: XM_039802608.1


Basic Information

Item Value
RNA id XM_039802608.1
length 4127
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC120560289
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27875794 ~ 27924222 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTCAGGCAAAAGGTTGAAACAACGAAAACAGCTGCGAGCACAGAAAAGACAGGCACGGAGAGGAAGGGACGTAGTCAGCCAACAGCCGAGCTATGTGGCAAGGCAGAGTGGGAGGACGAGACTGAATCTGTCCGATCATTTTACCCATTTGACATCCAGCTAAGGTTGCTAACGGCTTTTTGCTTCGAAGTCGATTTTCGCCCTACAACGTTAGCTACCTGGAATGCGACAACGCGGCAGAGAGATAACAAACAGGCCAAACTATCAGACGACAGGGACGTTCAGTTAAAGCTGCCAGGCTGTGGTTTTCCTCCTGAGTCCACCTCTTTTTGTTAGgaggaaaaaaagagaagatcCAACAAACCGGAGAGTCGAGGGAGAGCAGCCTGAACCAGAGGAAATAGAAACACAgaggaggacagaaagaaaaggCAGCAGAGTTACCCATCCAGCCACCAAACTcacagaggaaggaaggagagagacagagagtgagacagcGAGATAAACCCCATCATTCAGAGGGGATTCTGGGTGGAATGACCCAGTCATGATGTCACAGCCGTGCAACACCACACGCCCAGGTGACCAAGGAGGGCGTGTCCGGCTATCAGCCAATCCCAGAGGGAGTACCAATAGTATTATTTCCGATTCCAGTTCAGAGACATTTCCTCTCAAGAGCCTCCTGCATCACTGACACTCTGCCACTCTGGTCGTATCTTCTGTGTCCACTCCTGCGCCTCTGGAGTCCTTACTGTTTCATGATTACCAATCTTGGGATGTTGGCGTCGCTTTGTGACAGCTGCCATGGAGATAAACGGATTCCTTTAGTAGACCATTTTAGACACAACCTCCAGATGTTGTGCCAGATGCAAGTTGTCCACACGGGCAGAATTGGACAAGGACAGGCACACAGGTGCTGTGCGGCTCAGCTTCCTAATTCTCACTGTTTGACAACATCACAGCAGGAAGTATAAGACTTCCTTTTCCTGTGGAACATTTGACTCTGCGTCCTGGCACTTGTGAGGACCTACTTGACCCTGTTGCAAATTAGTCAAGACTCTTATCCTCCAACATAGAAACCATGCGTCACATTCATGTGGAGTTAGCCCACAAAAAGGCTCCATTAGAGCTTGCAGCCCAGGAGGGGGACCTGCCTCCACCTGAAGCCCCAACACAGGGCCTTGACCCTGGTGTCAGATCGGGGACGCCCAGGCACTTCGGCCAGGAGCAGTTGCGGCTCCAAAAGGTCTACCAGCTCTCCATTTTCTCCCAGTTGGGGGGATTTTCTACCTCCACAGAATCCCACACTGATGCCCAACAGAGGCCTGTCCGGTTGGGTGTGAAAAGGGGGCAAGATGAGCCCCAATTGACTCATAAGCGCCCCCACCTGGGCGACTCCACAGACCAGGAGGCGTTGGAGGGGGGGGTGCTGTGTGGGCCAGCCCCAGCTCAAGGTGTTGGGATGGGGTTAGCGATGGGCCCTAGTGGGCCTGGTTCTGTATACTCTTGCACACAGATGGAGCACAGAGAATCTGAGGGGGGACTGTCACCCAGGTCTCCACCCCTCTCCCCAAGCCACAACCCTTCACGACGCCCAACTCAGCACAATCATGACAGGCCCATTCCTGATGTATTTTCTCCACTCTCACCTAAATCACCCCCAATGTGTGACCAACATAGCTCATCCAGGACTGAGCCACCTAACGGGGGCCACACACCCACCTACTCACTAGGTAGCCCTGCAAATGAGAGCTGTAGTAATGGCTCATCTGGAGGCCAGCCCAGCCCCCACTTATATGAAATGTCCACATATGAGACTCCCAACCCCGCCAGTCCCACCAGCCCTCCAGGCCCTTTCTCCCCACCACACCACACAGAGCTGCAGGAGCCAGGGGAGGCCACTGAATGGGAAGTTGGACTTGAATCCTCCCCACCTGAGCGAAGTGCCACCCAGACTGCCTCCTCATCCTCAAATGGCCTGGCTTCCTGGGAGAAAACACCCAGCAGTAATGGCCACCGTCTATCCTCTGGAGGCCATTGGCCGGCCAAAAAGAGGCTGCTGCCCCCGAGCGACACAGGCGAGTCATGTTCAGAAGATGAGGGACCCTCCACATCCAAGAGAAGCAGGCTGTCACTGCTGGCTCCAGGACTTGGCCCGTCCTCATGTCGCAGCACTGATGCTAAAGCTGCCCCTTACTGGAACCACCTGCTTCCTTCTGCACGGGACCGGCCTAAGACCACCACAGACTGCACAAGATCAGGGAGACGGCTAAAAAGTGGGCTGCGGCTGAAAAGTCGGCAGCTGCGCAGCGGCAGACACACGGACACCAGCCGCTCCACACGTTCCAGTTGGCCCTCATCTTCCATCAGCAGATCTCTACTTGGCAACTTTGAGGAGTCCATACTGAAGGGACGATTCTCCCCGTCAGGCTGGATCGAAGGCTTCACGGCGGAGATCGGTGCCAGTGGCTCCTATTGCCCACAGCACGTCACCCTGCCGGTGCAGGTTACGTACTACGACATCTCAGAGCACAGCGCACCCTCACCCTTcctgGGGGTGATATCCCTCGAGCCTCTTGGAAAGAAAGGATACAGCATACCCAAAGCAGGGACCATTCAAGTGACCTTATTTAATCCCAACAAAACTGTGGTGAAGATGTTTCTGGTGACCTACAACTTCGGCGACATGCCCGTTAATCACATGACCTTCCTGCGCCACCGTATCTTCCTGGTGCCTGTAGAGGAGGGGGTTGAGGGGAAAGGCGAGACGTCTCCAGAGGGCGGAGTGCTAGACAGGAAGAAGATTCTCTGTTACCTGATACATCTCAGATTCCAGAGCTCCAAATCTGGGAAGATCTACTTGCACAATGATATCCGGCTGCTATTCTCCCGCAAATCCATCGAAGTGGACACAGGGATCCCTTATGAGCTGAAATCTTTCACCGAGGTGCCAAGAAACCCTAAATACTCCCCCCGCGTGTGACCCCAGCTTCACCCTTTGACCCTCCCCAAAGCCAACACAGCCCCTCCTGTGCTTTACGGAGGGAGGGAAACAGACAGACTGCTAGAATGATGGACACAAAACTTGATAAGACTTGATGAGACACACCACAtgcacacaagacacacatgcacatatgaGACAGTGTTGGTGAAAGTAAAAGTCCCCCTTTTATGCATTTATTCACCATTGGAAAATTCAGGCAGTCAAAACAAATTGGTGATGGAATTGAAATTTCGATCAGGCAAACATGGCAGTCCTTCAAATCTTCCATttattgaaaatataaaaaaatattagaaATGCTGCCTGTATGCAGTCAAAAGCAGGACTTTTACAACATCTTCATCTGtacaaagaaagaaacacacacacacacacacacacacacacacacacacacacacacacacacacacataccaaaacAGATTCACTCAGAGCACATACTACACACATCACAGCTGAAACACTTCTGGTGTTGACTCTCTGAGTTCAGTGTTAACATGCATGCCTTGTGACTTAAACACCTGAATTTTCCTCTAGTGCCGTATCACACTGTCCTTCACTCTGCCTGCAGCTCCAACCGCCTCATCGGACCAATAATTTCCAAAACTTTTGATTTGACAAAAGGCCACAAACAATGGGCACAGCCCTGATTGCAGGGTTAAGAAAATTGTAACCCCTCCCCCATTTTTCACACAATAATACACTTTCTGACCAGCAGAGTATATATGAGCTGAGACACAAACACTAGTGAAAGCCAAGGCTGAAATGGAATCGGCTATCTTGATCAGAGGTCTTATCATTTaacacatgatttttttttaaaacacaccgGCTGATGATTTGACCAAACTCAGGACAAGTGTTGAGGAATAAATTACTCTTCTTAGCATTTCACCTACCATGGTACAGACCGCTGTGTGTGTACACTTCAAGCCAGGAGGGTCATACCATGTCAATGAAAAACAGGGGAATCCAGTTCATTTTATGTAGCCAGACTGAGGGACACTgtgctgttttcttttaaatttttttctttttttagattatCTTCAGAGCAGTCATATGTTggagcagaaaatgaaaaaataaaagacaagctgtagtatttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87249 lncRNA upstream 398828 27476748 ~ 27476966 (+) True G65171
TU87150 lncRNA upstream 485932 27389457 ~ 27389862 (+) True G65108
TU87147 lncRNA upstream 496579 27378998 ~ 27379215 (+) True G65106
TU87122 lncRNA upstream 504835 27299932 ~ 27370959 (+) False G65084
TU87119 lncRNA upstream 525239 27299932 ~ 27350555 (+) False G65084
TU87444 lncRNA downstream 78317 28002539 ~ 28005121 (+) True G65314
TU87497 lncRNA downstream 447234 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 538403 28462625 ~ 28463104 (+) True G65378
TU87522 lncRNA downstream 696863 28621085 ~ 28621299 (+) True G65385
TU87531 lncRNA downstream 831643 28755865 ~ 28756193 (+) True G65394
XM_039802054.1 mRNA upstream 838 27864528 ~ 27874956 (+) True cenatac
XM_039804004.1 mRNA upstream 170171 27688436 ~ 27705623 (+) True tars1
XM_039804592.1 mRNA upstream 214013 27626978 ~ 27661781 (+) True tmem8b
XM_039803964.1 mRNA upstream 251722 27608108 ~ 27624072 (+) True mccc2
XM_039804349.1 mRNA upstream 274988 27564959 ~ 27600806 (+) False LOC120561295
XM_039803840.1 mRNA downstream 17117 27941339 ~ 27957433 (+) True erap1b
XM_039803843.1 mRNA downstream 38388 27962610 ~ 27966429 (+) False si:dkey-283b1.6
XM_039803842.1 mRNA downstream 39424 27963646 ~ 27966429 (+) True si:dkey-283b1.6
XM_039802373.1 mRNA downstream 61901 27986123 ~ 28001022 (+) False si:dkey-164f24.2
XM_039802371.1 mRNA downstream 61902 27986124 ~ 28001022 (+) True si:dkey-164f24.2
TU87117 other upstream 574024 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 1217825 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 1233313 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 1379466 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1425902 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2262626 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2322665 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2323717 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2323761 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile