RNA id: XM_039802613.1


Basic Information

Item Value
RNA id XM_039802613.1
length 3538
RNA type mRNA
GC content 0.49
exon number 3
gene id rgmb
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18173443 ~ 18182905 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGAGGAGAAACCCCGGCCTGGCtggtgaggaagagagagatgtgtgtgcgtgtttagGACGGGAGAGGAGAGCACGCTGTGATCACAATCAAGGGGAAAGTCCGACCGCGGAGGGAGCGCACTTAAATCACGTGCGGTGTGGATGTTGTAGCCTACAGGGGGGAAGTAAAAGTGTTGTCGGAGTGACTTATCCTTGTACTttgttttcctcctctctttgcCTTTCGACCCCCTCCGCCCTGCATTCCGCGGAGCAGCTGTGTTTTAATGCCCCTGCGCACccgaggaggagaggaaggagacaagagtgaggaagaagaggcagaagaagaaggagaaggagaagaagaacaagaacaagaagaagtGAGAAGGCCTGGACACTACTCCTCCTCGCCCTTTGGAGGTCCGTCCACTCTCCCCTCCTGGCCCTGCATGGACGGGGATGGGGAGAGCCGGATGCTGTTGCCGCGGGGCTGAGCGCCTCGCATCCCCGTCTCTGGTGCGCCGCTTCcggccactgctgctgctgatcaTCGCTCTCTGCTGCGGTGCTCACATAGgTCAGTGCCAGGTTGCCATCCCTCAGTGCCGTATACAGAAGTGCACCACCGACTTCGTCTCCCTTACCTCCCACCTGACGCCGGCCGTGGATGGCTTTCACACTGAGTTTTGCAAAGCTTTACGTGCATACTCGGCCTGCACCCAGAGGACAGCTAAGTCCTGCCGTGGGAACCTTGTCTTCCACTCTGCTGTGCTGGGCATCTCCGACCTCATGAGCCAGAGGAACTGCTCCAGAGACGGGCCCACGTCCTCCACGCACCCTGAAGTTCAACACGAACCCTGCAACTACCACAGTCGCACCCAGCATGCTCACTCCCACTCCCACTCCCACTcccacatgcatgcacacacacattcgcaCGCTCACGGCCACAGCCAGGGCCACTCTCGGCCTGTCTATCTTTTCTGCGGGCTGTTTGGGGACCCACACCTGAGGACGTTTAAGGACAGCTTCCAGACTTGCAAGGTGGAGGGGGCGTGGCCTCTCATCGATAATGACTATCTGTCAGTACAGGTCACTAATGTTCCCGTGGTACCTGGCTCTAGTGCCACAGCAACTAATAAGATCACCATCATCTTCAAGCCCTATGAGGGTTGTACAGAACAGAGGGTCTACCAGGCCGTCACAGACAACCTCCCTGCTGCCTTTGATGATGGAACCATAAGCAGCGGAGAACCTATCCACATTTCTGCTGGTGCAGAAGGTGCAACTGGTAAAGTCCGGGCTCTGTGGATCTCTGAGCGCAGCCCGGGGCGCCACGTGGAGCTGCACGCTGGCTACATAGGTGTAACTGTAATCGTTCGCCAGCTAGGCCACTACCTGACATTGGCGGTGCGGATCCCAGAGGAGCTGGCTCAGGCCTACGATGCCACCCAGGACCTGCAGCTCTGTCTGAATGGCTGCCCCGGCGGAGAACGCATCGACCAGGCAGGGCATCTTCCCCTGCCCCTCTCCCCTCCTGTGCTCGGCCTGCAGCTTCAGCAGCTGCGTCGGCCCAGCTACTCCTCACAGACACAAGCATCTCCCTACGGTGCCGCGCAGGTTTTCAGTGTCGAGGGGGCGAAGGAACGCTGCAGGGAGCAGCTGGAGGTGCAGGACATTTACTTTCACTCCTGCGTGTTTGATCTCCTCACCACTGGCGATGCTAACTTCACAATGGCGGCGTACAGCGCCCTGAAGGACATGGAGAGTCTCCATCCACACCGGGATAGATGGAGGATCTACCCCCGCGGCTCTGCCACCTCCACCTTACACTCTGATTCTCAACCTATAACGCGGCTAGCTCTGCTCCTGCTGTGTGCTCTGAGCGTAGTATTGATGTAAGAGCGAGAGTGGGAGGCTTGTGTAGGACTTTGTGTGTGCACTAGAGAGAGAGTTTGGGGAGATTTTTGCTAAGCACTGATACTGAGCACTGATTCCTCTCTCATGTTCAGAGGAAACAGCAGTCTGGACAATTACTGCGAACTTTTTAGCACAGGAGATGGCAACACTAACTGCATCTTACCTGGCAGAATCAGCCCTCTGGGGAATAACACAGGTGATGTGATGTTGGCTTTCACAATCTGTCTTCATCTTTGGATAAGACACTTGACAATGACACAAACGTACCTGTGTGAGTGAATAGAGTGTGTGGATATACACTCCAAACTGTAAATAGCTTGTCTTCAGTGCAAAGTGTAATGGCGTGGAGTTCATTTTTTGTGTCATTTGATGTGATTTTTTCTTTGATACCTCAGACAGAGGATGTTTGTTTTAACAGAAGcactttatttagtttttttgttgttgttataacAAATCCACATCAGTGTTTCTTCCTCTCACTTACTGTCCTCCATGACAGTCTCCAATGGCTCAAGTTGTGGAGATCATCCATCAATTGATTTTTTAtcctttcaaagtaaaagtctgTTAAATACAAGGAGCTGCCATTTTTGCTAAATGCATCATTCTTCCAATAGCTGATTTTACACAGCGTCTCATTTTAATTCAGTCAATGTGAGTTGTTCCCTTTTGAATGTATTGTGAATAGTGTCACAGCAGATGCCATCAGTGCTATTTTGTTGCTGTATGAATTTCTTGTTTTTTCTCAGTCCTGATTTCAAATATGTGCGATTGtgtatgaaagtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtcagtgtttttttttctattgccaGTTGGTTGGATGCTtggatgtgtttttatttcctctTAGAATCATGTCAGAGTTATTCCCAACTTTTTGCCAAGAGGCTGTGATGATACCGGCTCATGTATGTTGCTCTCTGTAttctttgttgttttaattTGAGCCAAAGACCGATAATGTATGGTTTTTATGTACACAGGATGTCACAACTCACCACCAAACCAGCACTTGTCTCCTCCTCACACTCTCTCCCCTGTTTTTAATGTTGCTCCTGTAGACTGTTTTACTCCTACTGCCAGAATTGATGAGCTGCTCCTTACTGGGATACGTGTAAACTCGGCAAATCACTGAGAACTCTACACCGTCAGCTTCAGCAGTGTGTTGTGGGAAATGTATGCTATTTGATACCTGATAGACATGTCAAGACTATGAGCTTTTTTAAGATGTAGCTTTCTGTATAATTATGCCCCATTTGGTTGGCCATAATCagcttaatatcagtttttGGCAATGTGATCATACATCATGTGTGAGTGTCAGTTTGGTGAAGAGTGactggtcaatattgaaatactTAACTTATTTATGAACGTAGTGTCCTGTAGAGGAAGTAAAGATCCATATTCTTGCTGTTggataataatttaaaaaaatgtcagatgTGATTGTACTGCCACTTAGTGGTGCTCTGTTGCTATGTCAATGTGTTACTCAAGGCGCtcaaaaaaacatggaaaaaggaaaaaactgtGTGcaagtgttttatttaaaaaaacaataaagtcaAAATGGT

Function

GO: NA

KEGG:

id description
K06847 RGMB; RGM domain family member B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83570 lncRNA downstream 117300 18055251 ~ 18056143 (-) True G62399
TU83567 lncRNA downstream 117592 18055251 ~ 18055851 (-) False G62399
TU83475 lncRNA downstream 239975 17931742 ~ 17933468 (-) True G62339
TU83469 lncRNA downstream 246488 17914926 ~ 17926955 (-) True G62333
XR_005639420.1 lncRNA downstream 273617 17896791 ~ 17899826 (-) False LOC120560086
TU83626 lncRNA upstream 51700 18234605 ~ 18235686 (-) True G62452
TU83677 lncRNA upstream 121252 18304157 ~ 18304356 (-) True G62493
TU83781 lncRNA upstream 146698 18329603 ~ 18329892 (-) True G62567
TU83782 lncRNA upstream 148479 18331384 ~ 18332396 (-) True G62568
TU83785 lncRNA upstream 172337 18355242 ~ 18357753 (-) True G62571
XM_039802611.1 mRNA downstream 2685 18163106 ~ 18170758 (-) True erap2
XM_039802610.1 mRNA downstream 11116 18147120 ~ 18162327 (-) True LOC120560293
XM_039803154.1 mRNA downstream 108046 18059560 ~ 18065397 (-) True cdk7
XM_039803165.1 mRNA downstream 122986 18029439 ~ 18050457 (-) True serinc5
XM_039803166.1 mRNA downstream 156035 18012303 ~ 18017408 (-) True mtx3
XM_039803085.1 mRNA upstream 104384 18287289 ~ 18296704 (-) True LOC120560503
XM_039803087.1 mRNA upstream 114688 18297593 ~ 18303857 (-) False fancg
XM_039803086.1 mRNA upstream 114688 18297593 ~ 18303855 (-) True fancg
XM_039803090.1 mRNA upstream 130470 18313375 ~ 18321149 (-) True thoc5
XM_039803093.1 mRNA upstream 138649 18321554 ~ 18326918 (-) False tfip11
unassigned_transcript_262 other downstream 213559 17959813 ~ 17959884 (-) True trnaq-cug_5
XR_005639516.1 other downstream 277546 17859355 ~ 17895897 (-) False pip5k1bb
XR_005639575.1 other downstream 568323 17598088 ~ 17605120 (-) False LOC120561236
TU83669 other upstream 110351 18293256 ~ 18296678 (-) False LOC120560503
XR_005639489.1 other upstream 115996 18298901 ~ 18303862 (-) False fancg
TU83796 other upstream 194697 18377602 ~ 18380502 (-) True G62580
TU83799 other upstream 200100 18383005 ~ 18386269 (-) True G62582
TU83818 other upstream 257004 18439909 ~ 18442825 (-) False iqcd

Expression Profile