RNA id: XM_039802625.1


Basic Information

Item Value
RNA id XM_039802625.1
length 1069
RNA type mRNA
GC content 0.42
exon number 4
gene id ndufaf2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23257261 ~ 23273702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAACAGAATTGCTGGAGTTCTGCGGCGTACGTTCGGAATAGCACGCGACCACGTCGGGACAGATACTTTGGGGAATAAATATTACTTAATCCCAGAACAGAAGACATGGACAGGAAGGCTCGTCCGTGCCAAGCGGATGGTAGTGGCAGCCAATCCTAACGAATATGAATATATAGAAGGCAGCATACCGATGGAGTGGGACGcttgGATCCGAGGCAGACGGAAGGAGCCCCCCTCCGTCGAGGAGCTGCTGAAGAATGATTCTTACAGGGAGCACATTAAACTGAAGGCCAAGGAAGTGGAGGAGAAAGAACTGGCCCTACAGGCCAAGGAgtatgaggagggtctggtggCGACTCCTGCAAAGACTGTGGCCAAGGGCCACGCAGCCACGACCAGCTTCGGCAAGCAGGAGATCAGCGAAGACCCCACCAGCACTGCAAACACGTTCCAGCCTGGCTCCTGGATGCCCAATCCCAAGAAATAGACTCAGACATCCACATATATGGAGACCGCTGTACAAAGTAATACAATCCAATAGAAAAGCCCTGCAATGAATACTACCTTTGTGAAACTGATATTCACCTTACGTTAAGACTTTGAAATTTAATTTTAGAAGCAACTTTCAGTATAATGCAATCCAAGTCAACAACACCACAAACTATGACTCCAGAAAATTACCAGTTTAATCATCTCCTCTCCATTTCACAGAGGAAGTATTTCTTTCAAGGCTGTTTTATTGGACTGTATTACATTGTATGAGTTCCTATTTTTCTAGTCCCTTTGTGTAGTCGATATTGTATATAAACAAGACAATAAGCATCGATCATCTTGAAGCTGACATATAAGTGACCGCAATGATTTAATGTAGCTGAAAGGTCTGTGAATAAAGCAAAGCAAAACTAAAATGGGTGTACTTCCAGTTAACAACTGCAAATACACTGTCATGTTGAAGatattgtaaaaaatgtaatctaatacattgtaaatattttaattaCACAGATATTGACTCCTTGCCATTATAATGAATCATATTAAATGTATAAAATCCAAGCTGATCAGAA

Function

GO: NA

KEGG:

id description
K18160 NDUFAF2; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639470.1 lncRNA upstream 11893 23219850 ~ 23245368 (+) True LOC120560300
TU85631 lncRNA upstream 269221 22987181 ~ 22988040 (+) True G63914
TU85584 lncRNA upstream 351295 22904035 ~ 22905966 (+) True G63872
TU85491 lncRNA upstream 1107137 22131884 ~ 22150124 (+) True G63792
TU85374 lncRNA upstream 1381574 21875445 ~ 21875687 (+) True G63715
TU85721 lncRNA downstream 1218 23274920 ~ 23281109 (+) True G63976
TU85782 lncRNA downstream 156988 23430690 ~ 23432473 (+) True G64026
TU85783 lncRNA downstream 157779 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA downstream 161356 23435058 ~ 23442981 (+) True LOC120560908
TU85820 lncRNA downstream 251945 23525647 ~ 23562232 (+) False LOC120560905
XM_039803246.1 mRNA upstream 366242 22884588 ~ 22891019 (+) True elac1
XM_039803244.1 mRNA upstream 373387 22862584 ~ 22883874 (+) True me2
XM_039803245.1 mRNA upstream 373387 22862584 ~ 22883874 (+) False me2
XM_039804108.1 mRNA upstream 395388 22840502 ~ 22861873 (+) True mapk4
XM_039804109.1 mRNA upstream 395388 22840502 ~ 22861873 (+) False mapk4
XM_039802627.1 mRNA downstream 9377 23283079 ~ 23330548 (+) True LOC120560302
XM_039802628.1 mRNA downstream 9378 23283080 ~ 23330548 (+) False LOC120560302
XM_039802630.1 mRNA downstream 9379 23283081 ~ 23330548 (+) False LOC120560302
XM_039804011.1 mRNA downstream 79248 23352950 ~ 23354264 (+) True LOC120561043
XM_039803798.1 mRNA downstream 134514 23408216 ~ 23487506 (+) True dock8
TU85622 other upstream 327056 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 1658462 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2579345 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2768423 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 2768423 20477812 ~ 20488838 (+) False wdr31
TU85875 other downstream 418960 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 1550016 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1550017 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2411270 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2640680 25914382 ~ 25915529 (+) False LOC120560031

Expression Profile