RNA id: XM_039802627.1


Basic Information

Item Value
RNA id XM_039802627.1
length 4165
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC120560302
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23283079 ~ 23330548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCGCTCCAGGATCCCGCCCATCCCGGTTACTTTGACAACACAAAGGACTTCACGGAACTCACAGGCGCCGCCTCCCTTTCCAAATAAGGGCAGTCTCTCCATGTACGGAAAACAATCGGTGCGAGATTGCCCTTTTCTCTTCCTTATCCCGTTTATATGATCGGAGAGGAACTGCGCTTCAGGTTGGAAGCGGTGCGATCATGGCCGAGCGAGTCCAGCAGCCCCCAGCCAAGCGGCTCTGCTGCAGGCCCGGCTACAACCCGGCATGCAGGCAGGGGCAGCGGGCTGGAGGAGTCCTGTGTGGCGGCGCAGGGTCCGCTCCGGGAGGGTCGGGGAATGGAAAAACGCACAACCCGGAGTCGTTGCTCGACATCGCGGCACGCAGAGTCGCGGAGAAGTGGCCGTTCCAGAGGGTGGAGGAGCGGTTCGAGAGGATCCCTGAACCCGTCCAGCGGAGGATCGTATACTGGTCATTCCCGAGAAGCGAGAAGGAGATCTGTATGTATTCCTCTTTCAACGCCGGAGGAGAGGAAAGTGGAACTAACGGGGACAATAATGACGAGACCCAGCTGCCTTTCCTACGGGGTGTCACTCTGCTAGAGGGTGGCTGGGTGGACAACGTATTGCAAGTCGgTTTCCATCTCAGCGGCACAGTGACGGACCCGGCCACACCCTCGACCCCAGAGCTCGTTTGCAGCGTCAGCGTCAGCTTCGACCGCTGCAAGATCACGGCAGTAACATGCACCTGCGGCAACAAAGACATCTTCTACTGCGCCCATGTAGTGGCACTGTCACTTTACAGAGTACGGAAGCCCGAGCAGGTCAAACTGCACCTGCCCATCTCAGAAACCCTGTTCCAGATGAGCAGAGACCAGCTGCAGAAGTTCGTCCAGTATCTGATTTCAGTCCACCACACCGAAGTGTTGCCTACCGCACAGAAACTGGCTGATGAGATTCTGTCGCAGAACTCGGAGATCAACCAGGTCCATGgggccCCGGACCCCACAGCAGGAGCCAGTGTAGACGATGAGAACTGCTGGCATCTGGATGAGGAGCAGGTTCAGGAGCAAGTCAAGCTCTTCCTGTCGCAGGGAGGATACCACGGCTCGGGCAAGCAACTCAACCTGCTCTTTAGCAAGGTGAGGGAGATGCTGAAGATGCGTGACTCCAATGGAGCGAGGATGTTAACACTGATCACAGAACAGTTCATGGCCGACCCTCGGCTTGCGCTGTGGAGACAGCAGGGCACCACCATGACCGACAAGTACAGACAGCTGTGGGACGAGCTAGGTGCCCTGTGGATGTGCATCGTACTGAACCCCCACTGCAAAGCAGAGCAGAAGTCTTCATGGCTGCGCCAGCTGCGCAGATGGAACAGCGTGGACGTCTGCCCCTGGGAGGACGGTAACCACGGCAACGAGCTGCCCAACCTCACCCACTCACTGCCTCAGGGGGCCCATGGCAACCAAGaGATGCGCCCCCACAGGACTGTGTTCACACGGGCCATTGAGGCCTGTGACCTGCACTGGCAGGACCGACACCTCCAGCACATTATCGCCAGTGACCTCTATGCCAACTACTGTTACCATGACAACCAGGAGGGCTCCCTCTTTGACACCCGCGGCTGGCCCTTGTGGCATGAACATGTCCCGACGGCCTGTGCCAGGGTGGATGCCCTGCGTTCCCACGGTTACCCAAGAGAAGCCCTCCGACTGGCCATCGCCGTGGTAAACACATTACGACGGCAACAGCAGAGGCAACTGGAGCACTTCCGCCGACACAAGAAAGAGTTGCTCCATAAAGGCCATACCTCCATAACCAACATGGAGGGCTGGGTGGGACACCCCCTGGATCCCATCGGTACCCTGTTCAGCACCCTGACAGAGTCGGgacgaggaggagaggagggctcCAACACCTGCTTAGACCTCTCAGgggaattcaaaaagttcaacGGGAAAggtattaagggaaatttcacaagTCAAGACTGCTCCAGTGTTGTAAGCCGAGCAGAGCTCCAGCGAATGCCCGTGCAGCGATTACTAGGAGACGGTGAATCGTATGTGGCACTGGCAGTGGagacagctctgattggcttaggCCAGCAGCGGGTGATGCCTGACGGGCTGTACGCTCAAGAGAAGGTGTGTCGCAATGAAGAGCAGCTATTGGCCAAGCTGCAGGAAGTGGAACTGGACGACTCCCTGGTCAAAATCTTCCGTAAACAGGCCGTCTTTCTGCTAGAGGCTGGTCCGTACTCTGGTCTTGGAGAGATCGTCCACAGAGAGAGTGTTCCCATGCACACCTTCGCCCGCTATCTCTTTACCTCTCTCCTACCTCACGACGCTGAACTGGCGTACAAAATTGCACTGAGAGCGATGCGGTTGCCGGTGTTGGAGTCGACGGCCTCGTCCGGTGACCTGTCACGACCCCACCACATTGTGTCCGTGGTGCCCAACCGCTACCCGCGCTGGTTCACCCTGAGCCACATAGAGTCTCAGCAGTGTGAGCTGGCCTCCACCATGCTTACTGCTGCCAAAGGTGACAGTCGCAGGCTGGAGACAGTCCTGGAGTCCATCCAGAAAAACATTCACTCCTCGTCTCACATCTTCAAACTGGCTCAAGATGCGTTTAAGATCGCCACTCTAATGGacagcctgcctgacatcacaCTTCTCAAAGTCTCTCTGGAGCTGGGACTGCAGGTGATGAGAATAACTCTGTCCACATTaaactggaggaggagagagatggtgCGCTGGTTAGTCACGTGTGCCACTGAAGTGGGTGTGTACGCCCTGGACAGCATCATGCAGAGCTGGTTCACCCTCTTCACCCCCACAGAAGCCACCAGTATCGTGGCCACCACTGTCATGTCCAACAGCACCATCGTCCGCCTCCACCTGGACTGCCACCAGCAGGAGAACCTGGCTTCATCCGCCCGCACCCTCGCCCTGCAGTGTGCCATGAAGGACCCCCAGAACTGCGCCCTCTCTGCTCTTACACTCTGTGAAAAGGACCACATTGCCTTCGAGACAGCCTACCAGATTGTACTGGACGCGGCGGCGACAGGGATGAGCTACACACAGCTGTTCACTATAGCACGCTACATGGAACACCGTGGTTACCCGATGAGGGCGTATAAGCTGGCGACGTTAGCCATGGCTCATCTGAACCTCAGTTACAACCAGGACACACACCCAGCCATCAACGACGTGCTCTGGGCCTGCGCGCTCAGCCACTCGCTGGGGAAGAACGAGCTAGCCGCCGTTATACCCCTGGTGGTCAAGAGTGTGAAGTGTGCCACCGTGCTCTCGGACATTTTGCGGAGGTGCACGCTGACCACGCCGGGCATGGTGTCGGCGCTGCACAGCCGCAGGAACTCTGGGAAGCTGATGTCCCTGGACAAGGCGCCGCTAAGGCAGCTGCTGGACGCAACCATCGGGGCCTACATCAACACCACGCACTCGCGGCTCACACACATCAGCCCGCGCCACTACAGCGAGTTCATCGAGTTCCTGGGCAAGGCCCGGGAGACTTTCATGATGGCTCACGACGGACACATTCAGTTCACCCAGTTCATAGACAACCTGAAACAGATCTACAAGGGCAAAAAGAAACTAATGATGCTGGTGAGGGAGAGGTTTGGCTGAGGGTGAGGCTGGGGGTCGCCAAATACTCCCCTCCCACTCTAGTACTTTTCTATTAACTTGAGTCTGCCTTTTGAACTTCTTTTGGACTTAATAAAATGGAGAAGTAAAAAGAGGGATGTGACTTGTAGAATGAAgcaaaaagagaaaggaaaagatgacaaaaaaatcaacagaGCCACACGCGGTATTATTGTTCTTgctgttgttattgttataaacattattactattattattattaataatattattactaCTATGTGTACagaagtgtttttatttttcagaagaGAGGAAATTTGTCACGTTGTGaatgttgtgtgtatttctgtacaTGTGTGCGAGAGGAAAATGAAAGTgaaatggctttttttatttttgttctttttatttttatgatttaaaaCATCTTTCTTTCCCCCCTTTTTCAGTGTACATTGAGTTATATGTTGTCAAGTGGCTGAAGCCCTTCTTCAATAGCGCtcatgtaaaaacataaaaaaaaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85721 lncRNA upstream 1970 23274920 ~ 23281109 (+) True G63976
XR_005639470.1 lncRNA upstream 37711 23219850 ~ 23245368 (+) True LOC120560300
TU85631 lncRNA upstream 295039 22987181 ~ 22988040 (+) True G63914
TU85584 lncRNA upstream 377113 22904035 ~ 22905966 (+) True G63872
TU85491 lncRNA upstream 1132955 22131884 ~ 22150124 (+) True G63792
TU85782 lncRNA downstream 100142 23430690 ~ 23432473 (+) True G64026
TU85783 lncRNA downstream 100933 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA downstream 104510 23435058 ~ 23442981 (+) True LOC120560908
TU85820 lncRNA downstream 195099 23525647 ~ 23562232 (+) False LOC120560905
TU85900 lncRNA downstream 404276 23734824 ~ 23735293 (+) True G64127
XM_039802625.1 mRNA upstream 9377 23257261 ~ 23273702 (+) True ndufaf2
XM_039803246.1 mRNA upstream 392060 22884588 ~ 22891019 (+) True elac1
XM_039803244.1 mRNA upstream 399205 22862584 ~ 22883874 (+) True me2
XM_039803245.1 mRNA upstream 399205 22862584 ~ 22883874 (+) False me2
XM_039804108.1 mRNA upstream 421206 22840502 ~ 22861873 (+) True mapk4
XM_039804011.1 mRNA downstream 22402 23352950 ~ 23354264 (+) True LOC120561043
XM_039803798.1 mRNA downstream 77668 23408216 ~ 23487506 (+) True dock8
XM_039803796.1 mRNA downstream 157419 23487967 ~ 23562285 (+) True LOC120560905
XM_039803799.1 mRNA downstream 373854 23704402 ~ 23722529 (+) True ercc6l2
XM_039803800.1 mRNA downstream 375729 23706277 ~ 23722529 (+) False ercc6l2
TU85622 other upstream 352874 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 1684280 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2605163 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2794241 20477812 ~ 20488838 (+) False wdr31
TU85875 other downstream 362114 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 1493170 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1493171 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2354424 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2583834 25914382 ~ 25915529 (+) False LOC120560031

Expression Profile