RNA id: XM_039802631.1


Basic Information

Item Value
RNA id XM_039802631.1
length 3104
RNA type mRNA
GC content 0.51
exon number 24
gene id gpat2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25980908 ~ 26161608 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCGGTAACCATCTTTGTTTGGATTAAAGAGACGCAACGACGCCATCGAACGACGCAACCTGGAAAACGGggagaagaaagaaataaagaaaaacggTGTCAAGTGCAGCAGACGGAATATTTACCCTGCTGGGAAACATCTTCAAAACTGCGgCAGCGCTGAATGTCTACACCAGTCGTCCTCATCAGACAAAACCTGCTGCTGCTTCAGAATAAGGTCTCTGAGTAGAAGTCTGCAGGGGGCTCACCATGGTGCAGGAGCAGAATGACGGGATAAACAGCAACATGGTCCTTCCACCAATTCAACAAAATGGACTTGCTTTGTCATGGGAAATGAAGGTCAAGAAAAAGCTAAAGACTGTGCCTCCATGTCTAGGCAAGTTCAGACCGATTGTTGGCCAGTGCTGCCACCAGTGCACCCCAGACAGTCTGCGCAAGAAGCTTGGACAAAACTCTTCACTTGGCTTTCACAACCTGCTGAGTGTCAATGAGACACACACCAGGTATCGAGGCTGGCTGGTGCGTAGGGTGTGCTGCGCGCTGTTTGTGAGTGGGTGCAAGGTTTACTCAAGTCCTGTTAGCAACAGACTGGAGAGAGTCTATGAGAGCAACAGGGTGAAGGAGGCGCTCAAAGCAGAGCATAAAGCACCTGAGGGGGGAGACAGCCAAGGGCAGCTCAACCACCTCTCGCCATTCCTCCCCCTCATTAACACCTGCATATCACCTAGCCTcttacgATTCCTGAGCTGGGTGATGCTGAAGATGCTTTCTTCCATGTTTGGCAGTGTTCAAGTTAACCTCAACCATCTGCCGGCTTTGCACAGAGCCTCACAAGAGGGATCTCTGCTGGTGTATGTGCATCTGCGTCAGAGCATCGTGGACTGTGCTCTCATCCCCCTGGTGCTTTTCTCTCATAACCTGAGGGTCCCATACACTGTTTGTCCCTTCCACATTACCAGCTCCTCCATAAGATCAATCTTGAAGAAAGTAGGTGTGGTCCTCCTGCCAACTTCTGCAGTGACCGAGCAGGATGCTGAGATGGACAGTCTATACAATCCTGTAATGACCTCCCTGGTACGTGAGCTGCTACATGAGGGTCAGGCGATAagtgttggtgtgtcagcggAGTCTGGCCGAGGTGGCCAGTGGCTGGCTCGCATCAGACAACTCATCAAAGAGGGATCTGTCCCTGATGTCAGTCTGGTCCCTGTGGGCATCTCCTACGACTGTGTGCCCAAGATCATCACACAGGTTGGCCTAAGCTCTGTGTTGCAGTGGTTTTGGTCTCTTCTCTGGATGAGAACAGGAGGAAGTGTGAGGATCCACTTCGCTCAGCCCTTCTCTCTCAAGgagATGTGTGAGTCAGGGAGGTGCAGAGTAGATGAATGGCTCCCTCTACAGGACCTGTTGCTGCCGGTTATCCTCAACAACAGAACTGACAGTGTATTTGGAGGGAGGAGGATGCCGTGGCTTCTGCCTTCTTCTCATTATGCAGCTGAACTCAAAGAGCCAACTCATCCTGAGAGAGACCTCAGCATCGCCATCATCCTCCACCTCATCTTCTCTGCAGCCTCCTGCACGGCTGTGATGTCCACCAGTCTGGTGTCCAGTCTTTTGCTTTACAGACACCGCAAGggtgtgtgtgcttctgtccTGTGTCGTGATGTGGCCTGGCTCACGGAGGAACTGTTGTTCAGGAACAAAGACGTTGGTTTCGGGGGAAGTTTGGAGGAAGTTGTCCACTATTCCCTCTCCCTGCTAGCCCCTCACCTCATCATAGCTGCAGTGCCGTCTAGGAAAGACCCTTTTATTGTGCCCTGTCGTTCTCTTGCTGCTACTCTTCACCTCACCCTCCAGGCACAGATTGTCACACACACCTTTATTTCAGAAGCTGTTGGTGCGTGCGCAGTGTCTGCCATGCTGTGCGAGGTGGTCGGCAGTGGTGTCAGCAGCAGGGTGAGGAGTGACGGCGTGGACGGAGAGCAGGTCAACGGTGACATGGAGTTTGATGTGGTGCTCTGCCAGTCCGAGTTGACAGAGAGAGCCCTGCAGCTCTGCCATCTCCTGCCGCCGGGCTTCATGCCAcccTGTCAGTCGTCCCAGAGTTTTGCACTGGATGCAGTTGACAGTCTGGTACGCTGTGGCATCCTGATTATGGAAGAAATTCCCAGAGACGTTCCTATTTGTGATTTCTGGAAGAAGGAGGGCGCTCTGTCCTGGACCACCGCTGATGACCCTTATCACAGCGACTCTGACTGTGACATGGAGGAGAAGGACCTGCGTTCCTACAAGATAAGCCAGCCGAGACAGTGTCCAGACATGCTCTTCTTCCTCTGCAGTATGCTAGCTGGTCATCTGAGGGCGCTGTGCTGGACGACTACCGGACTGGAACTTCTACACACACCTCTGCCAGAGGCAGATTTCGTGGCTCAGATACACTCCCATCTGTGTGACACAGCAAATAAGAAGAAACGGCACTATGAGAGCTGCTCAGAGGAGGCTGCACACACAGCGGTTAGATCTCTAATAGACCTGGGGGTCCTTTCGGAGGAGTGTCAGAAAGGAGGCGTCTTCCTGGGTGTCAGCCCTTTGTTCCAGTTGTCTGAAAACAGGCAGAAACTGCATCGCTTCATCTCACAGTACCTCTACAATTAATGTGTTTAACTGTGCAGCGTGACTCGAGGCCCTGGCACGGCTTTGTTGTATTGCAGATTCTGACCTCATCCTCGGTTAGTGTTAGAGAAGCTTTTGTTCGTGTTAAAAAAGATGCATGCTGAGCCGGGATGTTCAAGCCTTTAGGTTAATTGCATTTAGATTTTTCAGTGATGAGACATTGATTTCAAGTTTGTCTTCAGTAATAGCATTAGCATAAAACCACAGGAGACGAGGATTATGAAGTCCCAGCAATCAGCTGTGAGGACTCTGCTCGGTGCAGCTCGGGTTTCGACCATGTTTATGTTGTAATGAAGGCcgtgcaagttttgtttgtaaagtGAACATTAAGCCGAGCTATTTATTTTCACAAGTTGATCAGTTAACCAATGTTCAGATTGACAATAAACAAAATGCTTATTTCATCAACTCGACACGCTCTGTTGGTACA

Function

GO:

id name namespace
GO:0044255 cellular lipid metabolic process biological_process
GO:0008374 O-acyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86587 lncRNA upstream 51751 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 52317 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 58521 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 62816 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 63433 25917187 ~ 25917476 (+) True G64657
TU86705 lncRNA downstream 142242 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 210026 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 332727 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 350857 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 370144 26531752 ~ 26533420 (+) True G64836
XM_039802761.1 mRNA upstream 16422 25958799 ~ 25964487 (+) True adra2b
XM_039802762.1 mRNA upstream 16422 25958799 ~ 25964487 (+) False adra2b
XM_039802774.1 mRNA upstream 28330 25949454 ~ 25952579 (+) True dusp2
XM_039802767.1 mRNA upstream 31572 25940120 ~ 25949337 (+) False LOC120560362
XM_039802633.1 mRNA downstream 12616 26174224 ~ 26180116 (+) True zgc:152830
XM_039802637.1 mRNA downstream 19403 26181011 ~ 26184360 (+) True pcna
XM_039802416.1 mRNA downstream 35632 26197240 ~ 26245476 (+) False kcnip3b
XM_039802417.1 mRNA downstream 35632 26197240 ~ 26245476 (+) False kcnip3b
XM_039802418.1 mRNA downstream 68170 26229778 ~ 26245476 (+) True kcnip3b
TU86550 other upstream 65380 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 284339 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1146278 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1146289 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2287618 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 251261 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 332727 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 332727 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 332727 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 452629 26614237 ~ 26642481 (+) False cltcl1

Expression Profile