RNA id: XM_039802633.1


Basic Information

Item Value
RNA id XM_039802633.1
length 2077
RNA type mRNA
GC content 0.52
exon number 16
gene id zgc:152830
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26174224 ~ 26180116 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGCAGCACGAGTGCATATTGACGGATCATGTGATCAACCGGAGAGGACTGGAGGAAGAAACCGTTGTCAGCGCCTCTTTCATCCTTAAGCCACCGGAGCGAGAGGACCAACATGTGCACCAGCGTCCAGCCTGTTGAATGGTCCACCGACATCAAGAACCAGAAttttgatGGCATCGTGTTGGTGACCCAGAGCCATGACACGCTGCCCTCCAAGCTCGAGTGTCTGAAAGCACCGCTGCAGGACTACAGCTCTGTGGACAGCGGTCTgggggaggaggtggtggtCCTGAgggtccctggtctccctggtAACCGCCTGGTGTTTGCCTCCACTGGCCCGGTAAACCGCGACTACGATGACGTCAGGCGCTTCAGTGATGCAGCGGTCAACGGCATCAAAAGGGCTTTGAAAGCAGGCAtgcagcgccccctgctggtctGCCCTCCACACCAGGACTATAAGAACAGCACCGTGGTGGCTGCACTCGGGGCCCTTCATGCTCTCTACATGCCCCTTGAAGTGCGGGAGGGGAACGTAAAGCCCACCGACTACAAGGTGTGTGTTCTGGGTCTGTGGGCAGCAGAGGAGGCTGAGGGAAAGAGACTGGTGGAGATAACCGAAGCTCTGGAGAGTGGGAGACTGGCATGTCGTGACATTGGTGGCTCAGACCCTGAACGTATGGCTGCTCCTCGTGTGGCTGAGTATGTCCAGGAACTCTTCAAAGACAGCCCTGTACAGGTCGAAGTGATCAGCGACGTGAAGGTTCTGGAGAGAGAGTATCCCTGTCTCGCTGCAGTCAACCGCTGCGCTGACAGTGTACCTCGTCACCAGGGCAGAGTTATCAAGCTGCAGTACTGCGGAGAGGGACCTGTCCAAAAGACTCTCATGTTGGTGGGAAAGGGCATCACCTACGACACCGGCGGAGCCGACATCAAGGCTGGTGGTTACATGGCCGGGATGCACAGGGACAAGTgtggagctgctgctgtggCTGGCTTCTTCCTGACTTTAGCCAAgctgaagccaaaacatctgaaGGTTATCGGCTCCATGGCCATGGTGAGGAACAGTGTCGGTGCAGATTGCTATGTGGCCGATGAACTGGTGGTTTCCCGTGCGGGTCGCAGAGTGAGAGTGGGAAACACCGATGCCGAGGGACGCATGGTGATGGTCGACCTGCTCTGTGAGATGAAGGAGAAGGCTGTATGTGAGATTTCTCCTCAACTGTTTACTATTGCTACTCTGACTGGTCACGCCATCAGAGCCATGGGACCCAACTACTCTaTCATCATGGATAATGGACCGGCCCATCGCAACAAAAATGCTGCTCAGTGGCAGAAAGCTGGAGAGGCGTTGGGCGATGTGTTCGAGGTGTCCAGTATCAGACGAGAGGACTATGACTTCCACAAGGGAAAGTCTGAGTACGAGGATATTCTCCAGTGCAACAACCTGCCATCCTCCGCTACACCTCGAGGTCATCAGACCCCTGCAGCTTTCCTCATCATGGCCTCCGGGCTTGACAAGCATGGTGTGGATTCTAACGCACCTCTGCCGTACTCCCACATTGACATTGCTGGGTCCAGTGGTCCTTTCCCCGGTGTCCCAACGGGAGCCCCCATCCTCGCCATGGCAACCAACTACATCTTGTATGATAGTCTCTAAACAGATAGCCCCGGTATGAAACAGACCACACTATCTGCACTCAATACCAACTCAAATTTGGAACCGTCCAAGTATAAAGGATATCCCTGCCACAACACGTAATGCAAAGCGTGTAATTTTTCATGTCTGACATTCCTTAATACCTCAGATTGCTTTTCTCCAAAAATGTTCTTTGCTCTCTTTTCTAAGGTGTGACATTTGTCCTGCCTGCACCAATGACCCTGTTCTTAAGTGGCCTGAATCAACATATATATACTCAGGGGTTAAATGACAGTATAAAAATACTATCCTTTttatatgtgtctgtatgtgtgcaacAAACCGGGGACATGGTTGTGTGATAAGTGATGCTGTGTGCCAGTCAAACCAAGCAATATTCATTGATTAATAAAActaaatttgaaatttaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K01255 CARP, pepA; leucyl aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86587 lncRNA upstream 245066 25928924 ~ 25929158 (+) True G64677
TU86549 lncRNA upstream 245632 25926087 ~ 25928592 (+) False LOC120560359
TU86572 lncRNA upstream 251836 25922163 ~ 25922388 (+) True G64663
TU86567 lncRNA upstream 256131 25917765 ~ 25918093 (+) True G64658
TU86566 lncRNA upstream 256748 25917187 ~ 25917476 (+) True G64657
TU86705 lncRNA downstream 123734 26303850 ~ 26321956 (+) True G64764
TU86725 lncRNA downstream 191518 26371634 ~ 26383843 (+) False nsd3
TU86797 lncRNA downstream 314219 26494335 ~ 26496987 (+) True c6h22orf39
TU86807 lncRNA downstream 332349 26512465 ~ 26514759 (+) True G64834
TU86810 lncRNA downstream 351636 26531752 ~ 26533420 (+) True G64836
XM_039802632.1 mRNA upstream 12616 25980908 ~ 26161608 (+) False gpat2
XM_039802631.1 mRNA upstream 12616 25980909 ~ 26161608 (+) True gpat2
XM_039802761.1 mRNA upstream 209737 25958799 ~ 25964487 (+) True adra2b
XM_039802762.1 mRNA upstream 209737 25958799 ~ 25964487 (+) False adra2b
XM_039802774.1 mRNA upstream 221645 25949454 ~ 25952579 (+) True dusp2
XM_039802637.1 mRNA downstream 895 26181011 ~ 26184360 (+) True pcna
XM_039802416.1 mRNA downstream 17124 26197240 ~ 26245476 (+) False kcnip3b
XM_039802417.1 mRNA downstream 17124 26197240 ~ 26245476 (+) False kcnip3b
XM_039802418.1 mRNA downstream 49662 26229778 ~ 26245476 (+) True kcnip3b
XM_039802419.1 mRNA downstream 49662 26229778 ~ 26245476 (+) False kcnip3b
TU86550 other upstream 258695 25914382 ~ 25915529 (+) False LOC120560031
TU86491 other upstream 477654 25684972 ~ 25696570 (+) False LOC120561182
XR_005639471.1 other upstream 1339593 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 1339604 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 2480933 23692662 ~ 23693291 (+) True G64108
TU86770 other downstream 232753 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 314219 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 314219 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other downstream 314219 26494335 ~ 26496261 (+) False c6h22orf39
XR_005639500.1 other downstream 434121 26614237 ~ 26642481 (+) False cltcl1

Expression Profile