RNA id: XM_039802639.1


Basic Information

Item Value
RNA id XM_039802639.1
length 5226
RNA type mRNA
GC content 0.44
exon number 18
gene id LOC120560307
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 28963413 ~ 28979486 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGTGCCTTCATCACGCCAAGGTACTTTAGACCAAACTAGCTTCAGCACAGACCAAGGGAGCTTCATACATGAAGCCTCTGTGGTGAGTTACTTGGTTCTGCTGTTATTCATCCCCCTACAGTATGATGACCAGTCTGATTGACTTCCTGCAGTTCTTGACCTGATCCTGGTGGACTGGTGGAGGATGAAACAGATCAAATGGCTGTTTAAATACTCATTGAAACTTTGAGCCAAACAACTTGGGAGCTGGTGACTGGATAGAGGAGGTGACCACGAACAGTCATGGGATGTGGTGTCACAAAGTCCAACCAGTTCCACAAAAACTCTGGAAAAGCTGTCACAActATAAAAGCCGCCGTCCTCATTCAGCGATGGTATCGTCAGTATGTCGCCCGCACAGAGATGAGACGGAAATACACCTGGCACATCTTTCAGTCCATCGAATACTCAGGAGAACAGGCTCAGATAAAGCTTTATAACTTCCTTGGCTACCTCATGGACAATTTCACACCTACAAGCAATGAACGGAATTTGATCTCGCACATCTTCAGAGATAACGAATTCTGTCGGGACACAGAGTGGGAGAGGTTATTCTGCTACAAGAAAATAGAAGTGCCAGAGATTTACTCAGGACCTCACCTCACCTTCCCTCTGACGGTAGAGCAGGCGGTCAGGCTGGTGGAGGCCTTTAGGAACAAGAAACAGCTGCACTCGCGCTACGTCCTCCAGCTGCTGCTTGAGACGCTGAAACTGATCCGGATGTTACCCAACATCAACCGCATCTCTACCTGCCAAAGCAAAGAAATCACTATTTGTGGTGACTTGCACGGACAACTAGAAGACCTGCTGCTGATTTTCTACAAGAATGACATGCCGTCCATGGAGAAGCCCTATGTGTTTAACGGAGACTTTGTAGACCGAGGCAACGACTCCATCGAGATCCTCCTCATCTTGTTTTCATTCCTGCTCGTCTATCCGAGCGAAGTCCACCTCAACAGAGGAAATCACGAGGACCACATAGTCAACCTGAGGTACGGCTTCACAAAGGAGGTGCTGACTAAATACAAGATGCATGGCAAACGGATCCTGAAGCTGCTGCAGGAGATTTTCAGCTGGTTGCCGTTAGCGACGGTGATCGACCAGAAGGTGCTTGTAATCCACGGAGGGATCTCCGACACCACAGACCTCAGTGTCCTCGCCCGAGTGGACAGACATAGTTACGTCTCAGCGCTGAGGCCTCCGAAGAAGAGAAACCAGAACTCAGCGGCATCGTCCATCGACATAGATACGGAGGAGGTCTTGTCCCACAACAAGCTCACCCAGCGTCGGACCTCTCTCACGTATCCCAAACCCATTGCCCGCGACGTCTTCCCGAACCGCTCGCTGCAGGACTTCTCCGGACTGATCAAAGTTAACACGGTGGAGGATGTGGAGATCCACAGGAAGAGACCGTCCATTTCCATCCAGGGAATAAACAGACCAGAAAATGAGACGACTCAGGCTGCGTCCTCTGAGTCTGTCAACAGTGAAAATGGCAACGACGAGTGGAAGCAGATCCTGGACCTGCTGTGGAGCGACCCGATGAACCAGGACGGCTGCGTACCCAACGAGGTGCGGGGTGGAGGCTGCTACTGGGGCCCCGACGTCACAGAGGACTTCCTGAATAGACACAACCTGCAACTAATCATCCGCTCCCACGAGTGTAAACAGGACGGTTACGAGTTCTGCCACAACCGAAAGGTCCTCACTCTGTTCTCCGCCTCCAATTACTACGACGTGGGAAGCAACAGAGGGGCCTACGTGAAGTTGGGTCCAGACCTTGTGCCTTATTTAATTCAGTACCAGGCCAGCAGCATGATCCGAGAGCTTACCGTGAGACAAagTGTCGGACGAACCGAGCACTCAGCCCTTAAAGTCCTGCGGGAGCAGCTGTTTGCGCACAAATCTGACCTCCTCTGTGCCTTCAAAATGGTCGACAGCAAGAACACAGGTCATGTGAGTGTACACGACTGGGCCTGTGCAGTGGAGAGTGTGTTGCACCTCGGTCTGCCCTGGAGAATGCTAAGCTATCAGCTGGTCACCAGTAAGACCAGTGATGGCATGATCGACTACCACGAGTGGTTCAACGATCTCGCCATCAAAGGAACCAACACAGATCACATAGACCAAAGTCTACTTGAGACTTTGTATCGCCACCGCTCCACCTTGGAGACCATCTTCAGAATCGTAGACACCGACAACTCAGGCTTCATCACCATGGAGGACTTCCGGCAGACCTGGAAGCTGCTGAGCGTCTACCTAAAGATGGAGATCACGGATGACGCAATCTCTGACCTGGCCGTCACCATCGACCGCAACCAGGACGGCAGCATCGACATCGACGAGTTCATGGAGGCCTTCCGCCTCACGGACAAGAAGAGCCGGCTGGAGCGAGGACGCAGCATGTTCATGGGGACGGCCACTGACCTCACCAAGCTGGAGGGAGACCTCAACAtatgagcagagagagagagagagagagagagagagagactgaaaacAGAGAGCAACCTTAGCTCAGACCTCACCAGACAGGCAAGAGgatgggaggaagaggagataaAGCCAACACAAGCTGCTTTAGTGACGCACATTGAGACGTAGGATGCTGCTGAGCAACAGCTGTGTAATTCACATGGGATTAGAGTGAGGATAGAGTTCAGGGTATTTGCCAGTGAATattcatttcacattttgatGCAGttttatcgtgtgtgtgtgtgtgtgtgtgtgtcattttgtctcttttattaatatataaGACAGAATCGTCAAAAACTGTTGCAAAGGCAAAAtccacaaacagaaacaaaaaggcATCATATTTAGGCTGCATGATTTTTAAAGGTAAGATATCCTGTGCTTTCCTCAACAATTGTAGAGTAGTGttactatagactaatacaaaatTAATGCTTTTCCACACTTAGACCCACTAGAAGTGTGTAGTGGCATCTGAATTTGCAGAGACCCTTCCCTCTGCCTgtgttctctctttttttttctttttgagagTTGGAAAAAGAGTTTTGAAAACCCATGGCACTTCTGGGTGTCAACAAAGAGCCTTTGGGCCCCACGTTGTTGTGTAACCCCCAGCCAATAACAAATTCTCATCTCGGCATCTCATACCGACCAAACCGAGGCACAAGTCTAACTGACACGGACACCACTGACTCCAGATGTTTTGAAATGGACGTTTCGGTTGATCGATTTTCATTACGTCATTTCCCATATACGTATATCAATAGGTTCAGTACAaagacaataaatatttttttttaacctttaacatTTATTGAGGGAgagttcactgagaggcagcctctcttttgcaggaacaccctgatcacacagttacacatttgtacaaccacagtctgatctgctggccattGAGCAGCTCTACTGGAgcagttggaggttaagggccttgctcaagggcaccttagTGGTGGTAACGAGGGGAGGGATGAGCACTGCACTTTCActacccagattttatcctgtcggtctggggattgaaccgacaacctcccggtcacaagctcgcgtctctaacctttaggccaccactgccaaaTAATACATTGTATTAATCAACCAATGTCTCAAAAATATCCAAAAGCAGTTGTAagttacatgaaaaaaaaaacattaaaatattgcACCAGGAAATCTCCAGtcatattagggctgcaactaacagttATGTCATAAAAGATTAATCTGctaattattttttcaattaactGTTTGGTCTATACAATATTACAACACTATTACAATTTTCTAGATCAAAAGGTGATGTCAtgaattgttgattttgtctgactgaaaaacaaaaaatgttcaATATACTAAATGTTAGGACAAGAGAAAAGAGCAAATATTAATAATTGACAAATTTAAACAAGAGAATGTTTGGATATTCTACTAAAATTTGACTTATATTtagtttacaatgataaaagaaaaatcagacaaaagcagcaaatcctcacatttcgATAGCAGTAAACTAAGAATGTTCTCTCTACAATTGTTTCAGTGTGCAGGTGTTCCTCTTTTCATTTTCCAATTTCCAATAGCCTTGCATCTACATGTGATGTGCGAATAACTATACTCCTCTTAAAGATTTTAGAGATCGcagaaactaaacaaaaaaaatatgataaGACTATGAATATTTGTGCAATTCTACATCAGTTGCACTAATTAATTGTAACTTTAAATGTTGCTGGTGCCTTAGCAGTAGAAGTGTTTTAACTTCTAGGGATGAAGTTACTGTAAGTGTGCACTGatgatgtttttgtgtcagTGCCAACTGCCAACGATGTCCTGGGGTCCCTCCTCGTCTCAGGTGGGATTCAAACACTTCCTTTGTCCAGAACGGAGAACTCAtgcttttattcattttatttttaggatGTATTTCTACCTCCAAATTGTTGCTTTGAAGCCCAGAACAATTTATGTTTTAAAGTGatagtttgatattttgggaaatacgttTATTCATTTTCTAGTTAGCTGAGAGGATCattaccactctcatgtctgtctgttcaATATGACGCTGGAGACAGGAGACACTTAGCTTAGTTTAGTattaagactggaaacagctagcctggttctgACCAATGTTAACTAAATCCAAATACCAGAACCACTAAAGCTcaacaattaacacattttacCTAACTTGACTTTTGTTTAAATCATACAAAATCTGTGATTTTACAGATGGTGGTAGACAGATTTCTTTtcactttggacagagccaggctagctgtttccttctgtttccagtctttatgctaagctaagctaaccggctgctggctgtaacATCATATTCAATCTGTTATAAAATGTAACATCATATTCAATCTGTTATCAGTCTTCTTATCTAATAACTATCAGCAAGAACGCAAATATTAACCAAAACTTGTAACTATTTCTTTAAGATATGTAGACAACATGGTGTTTTagttctttttttgttaaatcttttgttttcattgttaaATAAAGTTTGCACATTGTTTCATATTATAAGTCAGCCAAAAGAGACATGAGGAAATCTTTGTGCATTTGAgtaaaattgttgtttttttgcatgaTGACCATGTATAACGTTTACTGTAAATATATCTCACAGTCACATTTGTagcattta

Function

GO: NA

KEGG:

id description
K13807 PPEF, PPP7C; serine/threonine-protein phosphatase with EF-hands

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87569 lncRNA upstream 116166 28845626 ~ 28847247 (+) True mboat4
TU87556 lncRNA upstream 147013 28816185 ~ 28816400 (+) True G65418
TU87555 lncRNA upstream 147937 28815254 ~ 28815476 (+) True G65417
TU87533 lncRNA upstream 197188 28766020 ~ 28766225 (+) True G65396
TU87531 lncRNA upstream 207220 28755865 ~ 28756193 (+) True G65394
TU87618 lncRNA downstream 6127 28985613 ~ 29002180 (+) True G65473
XR_005639509.1 lncRNA downstream 93455 29072941 ~ 29131216 (+) True LOC120560778
TU87732 lncRNA downstream 98940 29078426 ~ 29098313 (+) True G65565
TU87739 lncRNA downstream 124502 29103988 ~ 29105609 (+) True G65570
TU87928 lncRNA downstream 567963 29547449 ~ 29614880 (+) True G65710
XM_039804352.1 mRNA upstream 7585 28940542 ~ 28955828 (+) True LOC120561296
XM_039804350.1 mRNA upstream 7585 28940543 ~ 28955828 (+) False LOC120561296
XM_039803186.1 mRNA upstream 24771 28934966 ~ 28938642 (+) True hint2
XM_039803185.1 mRNA upstream 35565 28918006 ~ 28927848 (+) True emb
XM_039803180.1 mRNA upstream 46803 28902756 ~ 28916610 (+) True malt1
XM_039804024.1 mRNA downstream 34120 29013606 ~ 29016925 (+) True zgc:158260
XM_039803751.1 mRNA downstream 56529 29036015 ~ 29040470 (+) False LOC120560871
XM_039803750.1 mRNA downstream 56698 29036184 ~ 29040829 (+) True LOC120560871
XM_039802796.1 mRNA downstream 62454 29041940 ~ 29050224 (+) True LOC120560378
XM_039802802.1 mRNA downstream 81261 29060747 ~ 29072167 (+) False zgc:152968
TU87117 other upstream 1661643 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2305444 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2320932 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2467085 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 370638 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1207362 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1267401 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1268453 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1268497 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile